Detailed information NTG0024648

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: NTHI_RS06885
• Genome accession: NC_007146
• Coordinates: 1385771..1387111 (+)
• Length: 446 a.a.
• NCBI ID: WP_011272475.1
• Uniprot ID: Q4QL22
• Organism: Haemophilus influenzae 86-028NP
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1380771..1392111

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NTHI_RS06870 (NTHI1454)	lrp	1381838..1382317 (+)	480	WP_005653255.1	leucine-responsive transcriptional regulator Lrp	-
NTHI_RS06875 (NTHI1455)	-	1382319..1385075 (+)	2757	WP_011272474.1	DNA translocase FtsK	-
NTHI_RS06880 (NTHI1456)	lolA	1385093..1385710 (+)	618	WP_005661471.1	outer membrane lipoprotein chaperone LolA	-
NTHI_RS06885 (NTHI1458)	rarA	1385771..1387111 (+)	1341	WP_011272475.1	replication-associated recombination protein A	Machinery gene
NTHI_RS06890 (NTHI1459)	-	1387199..1388341 (-)	1143	WP_011272476.1	hypothetical protein	-
NTHI_RS06895 (NTHI1460)	-	1388351..1389574 (-)	1224	WP_011272477.1	DNA cytosine methyltransferase	-
NTHI_RS06900 (NTHI1462)	aroA	1389829..1391127 (-)	1299	WP_011272478.1	3-phosphoshikimate 1-carboxyvinyltransferase	-
NTHI_RS06905 (NTHI1463)	purU	1391127..1391963 (-)	837	WP_005661478.1	formyltetrahydrofolate deformylase	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50278.16 Da
• Isoelectric Point: 6.3312

>NTDB_id=24648 NTHI_RS06885 WP_011272475.1 1385771..1387111(+) (rarA) [Haemophilus influenzae 86-028NP]
MSNLNFDFAENDFRPLAAKMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADEMENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSTVKKRYK

Nucleotide

• Length: 1341 bp

>NTDB_id=24648 NTHI_RS06885 WP_011272475.1 1385771..1387111(+) (rarA) [Haemophilus influenzae 86-028NP]
ATGTCTAACCTCAATTTTGATTTTGCCGAAAATGATTTTCGCCCACTGGCGGCCAAGATGCGTCCAACAAATCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCACTGCGAAAAGCTATCCAAGCTGGGCATATTCATTCTATGA
TTTTGTGGGGCCCACCAGGTACGGGGAAAACAACCCTTGCAGAAATCATAGCACAACGTATTAATGCAGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGTATCAAAGAAATTCGTGAAGCGATTGATCGTGCAAAACAAAATCGTCTTGCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCGCACATTGAAGACGGAA
CCGTTATTTTTATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCGTTGCTTTCTCGTGCCCGAGTGTAT
GTGCTGAAATCACTCACAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTGTAGAAGATCCTGAACGAGGATTGGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTGCAAGTGCTTGCCGAATATGTTAATGGGGATGCACGATTAGCCTTGAATT
GCCTCGAATTAATGGTGGATATGGCAGATGAAATGGAAAATGGAAAGAAAATTGACCGCACTTTATTAAAAGAAGTCTTA
GGCGAACGTCAAGCGAGATTTGATAAACAAGGTGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTTCGAGG
TTCTGCTCCAGACGCTGCACTGTATTGGTATGCAAGAATTTTAACGGCAGGTGGCGATCCTTTATATGTCGCGCGCCGAT
TACTTGCCATTGCTTCAGAAGATGTGGGAAATGCAGATCCTCGTGCTATGCAAGTTGCATTGGCTGCTTGGGATTGCTTT
ACTCGAGTGGGGGCTTATGAAGGAGAGAGAGCCATCGCCCAAGCCATTATATATCTCGCAGTAGCGCCAAAAAGTAATGC
GGTTTATACTGCATTTAACACAGCAAAACAGCAAGCGAAAGATTTGCCCGATTACGATGTTCCACCACATTTACGCAATG
CGCCAACTAATTTAATGAAAGAGCTTGGCTATGGGGCTGAATATCGTTATGCTCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACCTGAATTAAAAGATACTCAATATTATTTTCCAACGAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGATTACGTGAGCAAGATAAAAGTACGGTGAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (188-266)

• MgsA AAA+ ATPase C terminal (MgsA_C) (267-433)

• ATPase family associated with various cellular activities (AAA) (AAA) (53-159)

3D structure

• PDB: 3BGE

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.243	94.843	0.372