Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CLI97_RS18825 Genome accession   NZ_CP023320
Coordinates   3612077..3612856 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SCGB     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3607077..3617856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI97_RS18805 (CLI97_03707) trmFO 3607764..3609071 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CLI97_RS18810 (CLI97_03708) xerC 3609141..3610058 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  CLI97_RS18815 (CLI97_03709) hslV 3610074..3610619 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  CLI97_RS18820 (CLI97_03710) hslU 3610636..3612039 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  CLI97_RS18825 (CLI97_03711) codY 3612077..3612856 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CLI97_RS18830 (CLI97_03712) flgB 3613210..3613599 (+) 390 WP_094246939.1 flagellar basal body rod protein FlgB -
  CLI97_RS18835 (CLI97_03713) flgC 3613599..3614051 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  CLI97_RS18840 (CLI97_03714) fliE 3614062..3614382 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  CLI97_RS18845 (CLI97_03715) fliF 3614425..3616035 (+) 1611 WP_062623353.1 flagellar basal-body MS-ring/collar protein FliF -
  CLI97_RS18850 (CLI97_03716) fliG 3616048..3617064 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  CLI97_RS18855 (CLI97_03717) fliH 3617057..3617812 (+) 756 WP_094246938.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=246076 CLI97_RS18825 WP_003154263.1 3612077..3612856(+) (codY) [Bacillus velezensis strain SCGB]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=246076 CLI97_RS18825 WP_003154263.1 3612077..3612856(+) (codY) [Bacillus velezensis strain SCGB]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment