Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CLD04_RS09415 Genome accession   NZ_CP023257
Coordinates   1784192..1784971 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain TLO3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1779192..1789971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS09395 (CLD04_09395) trmFO 1779885..1781192 (+) 1308 WP_017694866.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CLD04_RS09400 (CLD04_09400) xerC 1781260..1782174 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  CLD04_RS09405 (CLD04_09405) clpQ 1782187..1782732 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  CLD04_RS09410 (CLD04_09410) hslU 1782740..1784152 (+) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  CLD04_RS09415 (CLD04_09415) codY 1784192..1784971 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CLD04_RS09420 (CLD04_09420) flgB 1785351..1785740 (+) 390 WP_095843703.1 flagellar basal body rod protein FlgB -
  CLD04_RS09425 (CLD04_09425) flgC 1785740..1786192 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  CLD04_RS09430 (CLD04_09430) fliE 1786203..1786523 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  CLD04_RS09435 (CLD04_09435) fliF 1786569..1788179 (+) 1611 WP_051388163.1 flagellar basal-body MS-ring/collar protein FliF -
  CLD04_RS09440 (CLD04_09440) fliG 1788192..1789208 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  CLD04_RS09445 (CLD04_09445) fliH 1789201..1789953 (+) 753 WP_172843761.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=245541 CLD04_RS09415 WP_003220850.1 1784192..1784971(+) (codY) [Bacillus subtilis strain TLO3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=245541 CLD04_RS09415 WP_003220850.1 1784192..1784971(+) (codY) [Bacillus subtilis strain TLO3]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment