Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CLI14_RS13300 Genome accession   NZ_CP023208
Coordinates   2876704..2877405 (+) Length   233 a.a.
NCBI ID   WP_013855424.1    Uniprot ID   A0AAW4AGA2
Organism   Vibrio anguillarum strain ATCC-68554     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2871704..2882405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI14_RS13280 (CLI14_13280) greB 2871749..2872231 (-) 483 WP_010319306.1 transcription elongation factor GreB -
  CLI14_RS13285 (CLI14_13285) - 2872575..2874905 (+) 2331 WP_013855420.1 Tex family protein -
  CLI14_RS13290 (CLI14_13290) - 2875055..2875525 (-) 471 WP_026027513.1 hypothetical protein -
  CLI14_RS13295 (CLI14_13295) bioH 2875793..2876557 (-) 765 WP_040122934.1 pimeloyl-ACP methyl ester esterase BioH -
  CLI14_RS13300 (CLI14_13300) comF 2876704..2877405 (+) 702 WP_013855424.1 amidophosphoribosyltransferase Machinery gene
  CLI14_RS13305 (CLI14_13305) nfuA 2877505..2878092 (+) 588 WP_013855425.1 Fe-S biogenesis protein NfuA -
  CLI14_RS13310 (CLI14_13310) nudE 2878247..2878792 (+) 546 WP_013855426.1 ADP compounds hydrolase NudE -
  CLI14_RS13315 (CLI14_13315) cysQ 2878817..2879644 (+) 828 WP_010319313.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CLI14_RS13320 (CLI14_13320) - 2879727..2880485 (-) 759 WP_013855428.1 type II secretion system protein N -
  CLI14_RS13325 (CLI14_13325) - 2880482..2880979 (-) 498 WP_013855429.1 type II secretion system protein M -
  CLI14_RS13330 (CLI14_13330) gspL 2880990..2882201 (-) 1212 WP_013855430.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26646.04 Da        Isoelectric Point: 9.4459

>NTDB_id=245336 CLI14_RS13300 WP_013855424.1 2876704..2877405(+) (comF) [Vibrio anguillarum strain ATCC-68554]
MLSHWVQKTITRLVSRQCLLCRLPIETHQTGAWCKTCLTYFSPQPRCQQCGLPTLITVPQCGQCLANPPPWQRLYCVGDY
IFPLSHTIHQLKYEGQFWQSRHLSALLTPRIDTPAPLITSVPLHWQRRLKRGFNQSALLASQLSQQLGASCDNQLIKRNR
ATPQQQGLSKLQRKQNLKHAFTLRHLPTHKHIALVDDVVTTGSTVQQICQLLLEVGVERIDIYCICRTPEPKD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=245336 CLI14_RS13300 WP_013855424.1 2876704..2877405(+) (comF) [Vibrio anguillarum strain ATCC-68554]
ATGTTATCGCATTGGGTTCAAAAAACCATCACTCGCTTGGTAAGCCGTCAGTGTCTACTGTGTCGTTTACCGATTGAAAC
TCACCAAACTGGGGCTTGGTGTAAGACCTGCCTAACCTATTTTTCACCGCAACCTCGCTGCCAACAGTGCGGCCTGCCAA
CGCTTATTACCGTGCCTCAATGCGGGCAATGTTTAGCAAATCCTCCGCCTTGGCAACGCCTATACTGTGTCGGCGACTAC
ATTTTTCCGCTCAGTCACACCATTCATCAACTCAAATATGAAGGTCAATTTTGGCAATCTCGCCATTTGAGTGCCTTACT
GACGCCACGTATCGACACTCCCGCCCCGCTCATCACCAGCGTTCCGTTGCACTGGCAACGGCGCTTAAAACGCGGATTCA
ATCAAAGTGCACTACTTGCCTCTCAATTAAGTCAACAACTGGGGGCTAGCTGCGATAACCAGTTGATCAAACGCAATCGC
GCAACACCCCAGCAGCAAGGGCTTTCTAAATTACAGCGCAAACAAAATCTCAAACATGCATTCACACTACGGCACCTTCC
CACGCACAAGCACATTGCACTTGTTGATGATGTAGTGACCACGGGCAGCACCGTGCAGCAAATCTGTCAATTACTGCTTG
AAGTCGGTGTCGAAAGGATTGATATTTACTGCATATGCCGCACTCCTGAACCTAAAGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(136-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

58.369

100

0.584
  comF Vibrio campbellii strain DS40M4

51.681

100

0.528

Multiple sequence alignment