Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   CK945_RS16185 Genome accession   NZ_CP023168
Coordinates   3115343..3117739 (-) Length   798 a.a.
NCBI ID   WP_035338443.1    Uniprot ID   A0A7Z0WXM7
Organism   Bacillus paralicheniformis strain 14DA11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3110343..3122739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK945_RS16165 - 3113289..3114347 (-) 1059 WP_075213061.1 AI-2E family transporter -
  CK945_RS16170 - 3114436..3114567 (-) 132 WP_003183926.1 YrzQ family protein -
  CK945_RS16175 - 3114583..3114774 (-) 192 WP_016885531.1 hypothetical protein -
  CK945_RS16180 - 3114790..3115254 (-) 465 WP_023855377.1 PRC-barrel domain-containing protein -
  CK945_RS16185 recD2 3115343..3117739 (-) 2397 WP_035338443.1 ATP-dependent RecD-like DNA helicase Machinery gene
  CK945_RS16190 - 3117791..3118441 (-) 651 WP_035338444.1 tetratricopeptide repeat protein -
  CK945_RS16195 mnmA 3118536..3119654 (-) 1119 WP_050820726.1 tRNA 2-thiouridine(34) synthase MnmA -
  CK945_RS16200 - 3119760..3120899 (-) 1140 WP_035338447.1 cysteine desulfurase family protein -
  CK945_RS16205 cymR 3120920..3121336 (-) 417 WP_023855382.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89821.39 Da        Isoelectric Point: 4.9434

>NTDB_id=245122 CK945_RS16185 WP_035338443.1 3115343..3117739(-) (recD2) [Bacillus paralicheniformis strain 14DA11]
MQRHNPDQIEMEEASFVKGTVAAVIYHNETNLYTVLKVKVEETSESFEDKTVSVTGYFPLIHEDDIYTFYGKTASHPKFG
LQFQADHFKKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVNKLGEGAINKILSDGTVLYDVPKLSKKKADKLAAALQQHQ
GLEQIMISLSEFGFGPQLSMKIYQAYEAETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHEERIKAAILYTVEA
TCLQEGHTYIDTRQLIIETQKLLNQSAGDEKVTEMDVADAIISLGEQKELFIEDERCYYPSLYYAEQSFAKRVQKIAGQT
EYDDQFPESEFLLALGELEERMKVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKD
ETFPFVLTAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIDGRLLIIDETSMLDIWLANQLFKAIPDRIQV
IMVGDEDQLPSVGPGQVLRDLLASNVIPSVRLTDIYRQAEGSSIVELAHEMKQGKLPENLTAPTKDRSFIRCRQQQIKEV
VEKVVKNALQKGYSARDIQILAPMYRGAAGINELNALLQGILNPPKPKGREMKYGDVVYRTGDKVLQLVNQPEHNVFNGD
MGEIVSIFYAKENTEKEDMAVVSFDGNEITFTKKDFNQFTHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSKKFLILCGEEEALEWGVKNKESSERQTSLKRRLQQAAHEEDEELMALQKELPFSVYDANIGMEGITPFDFMEKEAE

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=245122 CK945_RS16185 WP_035338443.1 3115343..3117739(-) (recD2) [Bacillus paralicheniformis strain 14DA11]
ATGCAGCGCCATAACCCGGACCAAATTGAAATGGAAGAAGCTTCATTTGTAAAAGGAACGGTTGCGGCTGTCATTTATCA
TAATGAAACAAACCTGTATACCGTATTAAAAGTAAAAGTGGAAGAAACATCGGAGTCTTTTGAAGACAAAACCGTTTCTG
TCACGGGTTACTTTCCTTTGATCCATGAAGACGATATCTACACTTTTTACGGAAAAACCGCCTCCCATCCGAAATTTGGC
CTGCAATTTCAAGCGGATCATTTTAAAAAAGAAGTGCCGACAACAAAAGAAGGTGTGATCCAATACTTGGCCAGCGATTT
ATTTGAAGGAATCGGCAAAAAAACGGCCGAGGAAATTGTTAATAAGCTTGGGGAAGGTGCGATCAACAAAATTTTAAGCG
ACGGCACCGTCCTGTATGATGTTCCGAAGCTCTCCAAAAAAAAGGCGGATAAGCTTGCCGCTGCCCTGCAGCAGCATCAG
GGGCTCGAACAGATTATGATCTCCTTGAGCGAATTCGGCTTCGGCCCCCAGCTGTCCATGAAAATTTATCAGGCGTATGA
AGCGGAAACGCTTGATAAAATCCGCGAAAATCCGTACCAGCTTGTCAAGGATGTCGAAGGAATCGGCTTTATCAAGGCGG
ACGAACTGGGCGGCAGAATGGGGATCTCAGGCAAACATGAAGAGCGGATCAAGGCGGCGATTTTATACACGGTTGAAGCG
ACATGCCTTCAAGAAGGGCATACATACATAGACACGAGACAGCTCATCATCGAGACGCAAAAACTGTTAAACCAGTCTGC
AGGTGATGAAAAAGTAACCGAGATGGATGTGGCGGACGCGATCATTTCTTTAGGGGAGCAAAAAGAGCTGTTCATTGAAG
ATGAAAGGTGTTATTATCCGTCCCTTTACTACGCTGAACAAAGCTTTGCCAAAAGGGTGCAGAAAATCGCCGGACAGACC
GAATACGATGACCAGTTTCCCGAATCGGAATTCCTGCTCGCTTTAGGGGAGCTTGAAGAACGGATGAAAGTGCAGTACGC
GCCAAGTCAAAAAGAAGCGATTCAAAAAGCGCTGATGTCGCCGATGCTGCTTTTGACAGGCGGACCGGGAACCGGGAAAA
CGACCGTCATTAGGGGAATCGTCGAGTTGTACAGCGAGCTGCACGGCTTAAGCTTAAATCCGGCTGATTACAAAAAGGAT
GAAACGTTTCCGTTTGTGCTCACAGCACCGACCGGCCGGGCCGCTAAGCGGATGAGCGAGTCGACCGGGTTGCCGGCCGT
AACGATTCACAGGCTTCTCGGCTGGAATGGAGCCGAAGGATTTACGCACGATGAAGACAATCCGATTGACGGACGGCTGC
TCATCATTGATGAAACGAGCATGCTTGATATATGGCTCGCCAACCAATTGTTCAAGGCGATTCCCGACCGGATTCAGGTC
ATCATGGTCGGAGATGAAGACCAGCTTCCGTCCGTCGGTCCCGGACAGGTGCTGAGGGATCTTTTGGCATCGAATGTCAT
TCCTTCTGTCAGATTAACCGATATTTACAGGCAGGCTGAAGGCTCTTCCATCGTTGAACTGGCGCATGAAATGAAACAAG
GAAAGCTTCCTGAAAACTTGACCGCGCCGACAAAAGACCGTTCTTTCATTCGCTGCCGCCAGCAGCAGATTAAAGAAGTC
GTCGAAAAAGTCGTCAAAAACGCGCTGCAAAAAGGGTATTCGGCCAGGGATATTCAGATTTTGGCTCCGATGTACAGGGG
AGCAGCCGGTATCAACGAGTTAAACGCGCTTTTGCAGGGCATCCTGAATCCCCCGAAGCCGAAAGGCAGGGAAATGAAGT
ACGGCGATGTCGTGTACCGTACCGGGGATAAAGTGCTTCAGCTCGTCAACCAGCCGGAACACAACGTGTTTAACGGTGAT
ATGGGTGAGATCGTCTCGATTTTTTATGCAAAAGAAAATACGGAAAAAGAAGATATGGCCGTCGTCTCTTTCGACGGGAA
TGAAATCACCTTTACAAAAAAAGATTTTAACCAATTTACGCACGCCTATTGCTGTTCAATCCACAAATCGCAGGGCAGCG
AATTTCCGATCGTCATCCTTCCGGTCGTCAAAAGCTATTACCGCATGCTGAGAAGGAACTTGCTTTACACGGCCATCACA
AGAAGCAAGAAATTCCTGATTTTGTGCGGGGAAGAAGAGGCCCTTGAATGGGGCGTGAAAAATAAGGAATCATCGGAAAG
GCAGACATCGCTTAAAAGAAGGCTTCAGCAGGCGGCGCATGAAGAGGATGAAGAGCTCATGGCGCTGCAAAAAGAGCTGC
CTTTTAGCGTCTATGACGCCAATATCGGGATGGAAGGCATTACACCTTTTGATTTTATGGAAAAGGAAGCAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(346-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z0WXM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

81.477

100

0.816

Multiple sequence alignment