Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CK945_RS09915 Genome accession   NZ_CP023168
Coordinates   1905728..1906507 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus paralicheniformis strain 14DA11     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1900728..1911507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK945_RS09895 trmFO 1901425..1902729 (+) 1305 WP_020451382.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CK945_RS09900 xerC 1902796..1903710 (+) 915 WP_035338771.1 tyrosine recombinase XerC -
  CK945_RS09905 hslV 1903724..1904269 (+) 546 WP_020451384.1 ATP-dependent protease subunit HslV -
  CK945_RS09910 hslU 1904286..1905689 (+) 1404 WP_020451385.1 HslU--HslV peptidase ATPase subunit -
  CK945_RS09915 codY 1905728..1906507 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CK945_RS09920 flgB 1906858..1907247 (+) 390 WP_020451387.1 flagellar basal body rod protein FlgB -
  CK945_RS09925 flgC 1907247..1907699 (+) 453 WP_025811385.1 flagellar basal body rod protein FlgC -
  CK945_RS09930 fliE 1907713..1908030 (+) 318 WP_020451389.1 flagellar hook-basal body complex protein FliE -
  CK945_RS09935 fliF 1908081..1909682 (+) 1602 WP_020451390.1 flagellar basal-body MS-ring/collar protein FliF -
  CK945_RS09940 fliG 1909696..1910712 (+) 1017 WP_020451391.1 flagellar motor switch protein FliG -
  CK945_RS09945 fliH 1910696..1911463 (+) 768 WP_020451392.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=245106 CK945_RS09915 WP_003181756.1 1905728..1906507(+) (codY) [Bacillus paralicheniformis strain 14DA11]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=245106 CK945_RS09915 WP_003181756.1 1905728..1906507(+) (codY) [Bacillus paralicheniformis strain 14DA11]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTTGTCAGCCGTAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGTCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGAGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGTGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGATCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment