Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CK238_RS08550 Genome accession   NZ_CP023075
Coordinates   1672731..1673510 (+) Length   259 a.a.
NCBI ID   WP_017417775.1    Uniprot ID   A0A411A618
Organism   Bacillus velezensis strain K26     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1667731..1678510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK238_RS08530 (CK238_08540) trmFO 1668418..1669725 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CK238_RS08535 (CK238_08545) xerC 1669795..1670712 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  CK238_RS08540 (CK238_08550) hslV 1670728..1671273 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  CK238_RS08545 (CK238_08555) hslU 1671281..1672693 (+) 1413 WP_267471192.1 HslU--HslV peptidase ATPase subunit -
  CK238_RS08550 (CK238_08560) codY 1672731..1673510 (+) 780 WP_017417775.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CK238_RS08555 (CK238_08565) flgB 1673864..1674253 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  CK238_RS08560 (CK238_08570) flgC 1674253..1674705 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  CK238_RS08565 (CK238_08575) fliE 1674716..1675036 (+) 321 WP_025649464.1 flagellar hook-basal body complex protein FliE -
  CK238_RS08570 (CK238_08580) fliF 1675079..1676689 (+) 1611 WP_022553346.1 flagellar basal-body MS-ring/collar protein FliF -
  CK238_RS08575 (CK238_08585) fliG 1676702..1677718 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  CK238_RS08580 (CK238_08590) fliH 1677711..1678466 (+) 756 WP_063636636.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29055.26 Da        Isoelectric Point: 4.6560

>NTDB_id=244766 CK238_RS08550 WP_017417775.1 1672731..1673510(+) (codY) [Bacillus velezensis strain K26]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQNQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=244766 CK238_RS08550 WP_017417775.1 1672731..1673510(+) (codY) [Bacillus velezensis strain K26]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGAATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411A618

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

98.842

100

0.988
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment