Detailed information NTG0244502

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: CJF12_RS18285
• Genome accession: NZ_CP023049
• Coordinates: 4188408..4189061 (-)
• Length: 217 a.a.
• NCBI ID: WP_034683877.1
• Uniprot ID: A0A086BIX2
• Organism: Chryseobacterium piperi strain ATCC BAA-1782
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4183408..4194061

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CJF12_RS18275 (CJF12_18405)	upp	4186910..4187560 (+)	651	WP_034683872.1	uracil phosphoribosyltransferase	-
CJF12_RS18280 (CJF12_18410)	-	4187564..4188253 (-)	690	WP_034683875.1	alpha/beta fold hydrolase	-
CJF12_RS18285 (CJF12_18415)	comF	4188408..4189061 (-)	654	WP_034683877.1	ComF family protein	Machinery gene
CJF12_RS18290 (CJF12_18420)	-	4189204..4190694 (-)	1491	WP_034683879.1	helix-turn-helix domain-containing protein	-
CJF12_RS18295 (CJF12_18425)	aceB	4190821..4192398 (+)	1578	WP_034683880.1	malate synthase A	-
CJF12_RS18300 (CJF12_18430)	aceA	4192554..4193837 (+)	1284	WP_394337001.1	isocitrate lyase	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 25326.36 Da
• Isoelectric Point: 9.5648

>NTDB_id=244502 CJF12_RS18285 WP_034683877.1 4188408..4189061(-) (comF) [Chryseobacterium piperi strain ATCC BAA-1782]
MILDIFFPNRCIHCNRIISADLLICNLCFSNIHFYHSSYFEESRIKEKCRLLFPVENAFALMRFEEKNLSRKIIHELKYR
TREKAGKILAGWVAERLDFNNKKPDLLVSVPLHPKKQKERGYNQLHLFTEALSDFYTILYDHHLIKRNHDSKAQALKNKK
HRLESQNTFSVTRPISGKHVLLIDDVFTTGNTLGTIAWEILSNGNNKVSVLVIAMDE

Nucleotide

• Length: 654 bp

>NTDB_id=244502 CJF12_RS18285 WP_034683877.1 4188408..4189061(-) (comF) [Chryseobacterium piperi strain ATCC BAA-1782]
ATGATTCTGGATATCTTCTTCCCTAACCGTTGCATTCATTGCAACCGGATAATTAGTGCGGATCTATTGATCTGCAATCT
TTGTTTTTCCAACATCCATTTCTATCACTCCTCCTATTTCGAAGAAAGCAGGATTAAAGAAAAATGCCGGCTATTATTTC
CTGTTGAAAATGCTTTTGCCCTAATGCGGTTTGAAGAAAAAAATCTAAGCAGAAAGATCATTCATGAATTAAAATACCGA
ACCAGAGAAAAAGCCGGGAAAATTCTGGCCGGATGGGTTGCAGAAAGATTAGACTTCAATAATAAAAAACCTGACCTTCT
GGTAAGCGTTCCTCTACATCCCAAGAAACAAAAAGAACGGGGATATAATCAATTGCATCTGTTTACGGAAGCTCTATCCG
ACTTCTATACGATCCTATACGATCATCATTTGATCAAAAGAAATCACGATTCTAAAGCTCAGGCTTTAAAGAATAAAAAG
CATCGTTTGGAGAGCCAAAACACGTTCTCAGTCACCAGACCCATTTCCGGAAAACACGTTCTTTTAATTGACGATGTGTT
TACCACCGGAAATACGCTCGGAACTATTGCCTGGGAGATCTTAAGTAACGGAAATAATAAGGTCAGTGTTTTAGTAATAG
CGATGGATGAATAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (2-36)

3D structure

• AlphaFold DB: A0A086BIX2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	53.456	100	0.535