Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   STR_RS08735 Genome accession   NC_006449
Coordinates   1657215..1657508 (-) Length   97 a.a.
NCBI ID   WP_011227584.1    Uniprot ID   -
Organism   Streptococcus thermophilus CNRZ1066     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1652215..1662508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STR_RS08700 (str1854) - 1652613..1653061 (-) 449 Protein_1646 CAAX protease -
  STR_RS11470 (str1855) - 1653135..1653560 (-) 426 WP_041827107.1 CPBP family intramembrane glutamic endopeptidase -
  STR_RS08710 (str1856) - 1653803..1654000 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  STR_RS08715 (str1857) - 1654249..1655442 (-) 1194 WP_022096898.1 acetate kinase -
  STR_RS08720 (str1858) comGH 1655498..1656454 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  STR_RS08725 (str1859) comGG 1656499..1656816 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG Machinery gene
  STR_RS08730 (str1860) comGF 1656794..1657231 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  STR_RS08735 (str1861) comGE 1657215..1657508 (-) 294 WP_011227584.1 competence type IV pilus minor pilin ComGE Machinery gene
  STR_RS08740 (str1862) comGD 1657480..1657908 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  STR_RS08745 (str1863) comGC 1657868..1658194 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STR_RS08750 (str1864) comGB 1658191..1659291 (-) 1101 WP_148148889.1 competence type IV pilus assembly protein ComGB Machinery gene
  STR_RS08755 (str1865) comGA/cglA/cilD 1659173..1660114 (-) 942 WP_011226629.1 competence type IV pilus ATPase ComGA Machinery gene
  STR_RS08760 (str1866) - 1660195..1660557 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10917.79 Da        Isoelectric Point: 10.4561

>NTDB_id=24405 STR_RS08735 WP_011227584.1 1657215..1657508(-) (comGE) [Streptococcus thermophilus CNRZ1066]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLIWEQINTNRRLMADNLHQQEVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=24405 STR_RS08735 WP_011227584.1 1657215..1657508(-) (comGE) [Streptococcus thermophilus CNRZ1066]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGTCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATGGGAACAAATTAATACCAACCGCAGACTAATGGCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

42.268

100

0.423
  comGE Streptococcus mutans UA159

42.268

100

0.423

Multiple sequence alignment