Detailed information NTG0243856

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: CGB83_RS08540
• Genome accession: NZ_CP022986
• Coordinates: 1878287..1878937 (+)
• Length: 216 a.a.
• NCBI ID: WP_228420138.1
• Uniprot ID: -
• Organism: Chryseobacterium camelliae strain Dolsongi-HT1
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1873287..1883937

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CGB83_RS08520	-	1873798..1874244 (-)	447	WP_100075412.1	6-pyruvoyl trahydropterin synthase family protein	-
CGB83_RS08525	-	1874512..1875321 (-)	810	WP_100075413.1	DUF4249 domain-containing protein	-
CGB83_RS08530	-	1875330..1877663 (-)	2334	WP_100075414.1	TonB-dependent receptor	-
CGB83_RS08535	-	1877822..1878211 (-)	390	WP_100075415.1	acyl-CoA thioesterase	-
CGB83_RS08540	comF	1878287..1878937 (+)	651	WP_228420138.1	ComF family protein	Machinery gene
CGB83_RS08545	upp	1879088..1879738 (-)	651	WP_100075417.1	uracil phosphoribosyltransferase	-
CGB83_RS08550	-	1879854..1883774 (+)	3921	WP_100077548.1	Pls/PosA family non-ribosomal peptide synthetase	-

Sequence

Protein

• Length: 216 a.a.
• Molecular weight: 24969.84 Da
• Isoelectric Point: 7.8117

>NTDB_id=243856 CGB83_RS08540 WP_228420138.1 1878287..1878937(+) (comF) [Chryseobacterium camelliae strain Dolsongi-HT1]
MLDLFFPNRCLECNRIIEADLAVCNLCFSHIHFTHFDFSGNNILKERCLLLFPVAHAFALMQFEKENISRKIVHELKYRN
REKIGKMIAGWIPQYLDFKDHQPDLLVSVPLHPRKQRERGYNQLHAFTNALSDLYGIPADHSLIKRNHYSKAQALKDKQH
RLQAENTFSLTRNITGKHILLIDDVFTTGNTLATIAWEILSEPGNTVSVLVMAMDE

Nucleotide

• Length: 651 bp

>NTDB_id=243856 CGB83_RS08540 WP_228420138.1 1878287..1878937(+) (comF) [Chryseobacterium camelliae strain Dolsongi-HT1]
ATGCTGGATTTATTCTTTCCCAACCGTTGCCTGGAATGCAACAGGATTATTGAGGCTGACCTTGCAGTCTGCAACCTCTG
CTTCAGCCACATTCATTTTACCCACTTCGATTTTTCCGGGAACAATATCCTGAAGGAGCGATGCCTTCTGCTGTTTCCGG
TTGCACATGCCTTTGCGCTGATGCAGTTTGAAAAAGAAAATATAAGCCGTAAAATTGTTCACGAGCTCAAATACAGGAAC
CGTGAGAAAATAGGGAAAATGATTGCAGGATGGATCCCTCAATACCTGGATTTTAAAGATCATCAACCCGACCTTCTGGT
AAGCGTTCCGCTCCATCCCAGAAAACAGAGGGAAAGAGGCTACAACCAGCTTCATGCTTTCACAAATGCCTTATCCGATC
TGTATGGAATCCCGGCTGACCACAGCCTGATCAAAAGAAACCATTACTCAAAAGCACAGGCACTGAAGGACAAGCAGCAC
CGCCTGCAGGCGGAAAATACTTTTTCATTAACCCGGAACATTACCGGAAAACATATCCTCCTGATTGATGATGTGTTCAC
CACAGGAAATACACTGGCTACCATTGCGTGGGAAATTTTAAGTGAGCCCGGCAATACAGTGAGCGTGCTGGTGATGGCAA
TGGATGAGTGA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (1-33)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	53.953	99.537	0.537