Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   CKF48_RS17340 Genome accession   NZ_CP022983
Coordinates   3410421..3412820 (+) Length   799 a.a.
NCBI ID   WP_095372465.1    Uniprot ID   A0A248TL98
Organism   Cytobacillus kochii strain BDGP4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3405421..3417820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKF48_RS17315 (CKF48_17305) - 3405983..3406642 (+) 660 WP_095372460.1 YczE/YyaS/YitT family protein -
  CKF48_RS17320 (CKF48_17310) cymR 3406695..3407114 (+) 420 WP_095372461.1 cysteine metabolism transcriptional regulator CymR -
  CKF48_RS17325 (CKF48_17315) - 3407139..3408281 (+) 1143 WP_095372462.1 cysteine desulfurase family protein -
  CKF48_RS17330 (CKF48_17320) mnmA 3408311..3409426 (+) 1116 WP_095372463.1 tRNA 2-thiouridine(34) synthase MnmA -
  CKF48_RS17335 (CKF48_17325) - 3409725..3410378 (+) 654 WP_095372464.1 tetratricopeptide repeat protein -
  CKF48_RS17340 (CKF48_17330) recD2 3410421..3412820 (+) 2400 WP_095372465.1 ATP-dependent RecD-like DNA helicase Machinery gene
  CKF48_RS17345 (CKF48_17335) - 3412952..3413422 (+) 471 WP_095372466.1 PRC-barrel domain-containing protein -
  CKF48_RS17350 (CKF48_17340) - 3413442..3413633 (+) 192 WP_095373640.1 hypothetical protein -
  CKF48_RS17355 (CKF48_17345) - 3413659..3413790 (+) 132 WP_095372467.1 DUF3918 family protein -
  CKF48_RS17360 (CKF48_17350) - 3413937..3415013 (+) 1077 WP_095372468.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 90182.06 Da        Isoelectric Point: 4.8048

>NTDB_id=243833 CKF48_RS17340 WP_095372465.1 3410421..3412820(+) (recD2) [Cytobacillus kochii strain BDGP4]
MDEQNSLDLFAEQKTYVKGKHLVTIFHNESNLYTVLRIRVLETNAQYEEKEAVITGYIPKIHEEETYTFLGEWKEHPKFG
LQFHVEQYKKEMPQTKEGVVNYLSGDLFKGIGKKTAQSIVDELGENAINSILNNPSLLDGIPKLASEKAKVLYDTLVENQ
GIEQVMIHLNQLGFGPQLSMKIFQTYKDQAIDILQKKPYQLVEDIEGIGFHRADEIGQQVGMSGSHPDRIKAACLYVLDS
ESAQAGHVYAEAEELLPAVKKLLEEKATEVIPYEAISEAILKLGEERKVIAEGQQLYLPSLFFSEKGIVTNIKRILNQTE
FNEQFPESEFLLALGQLEERLSVQYAPSQKDAIQKALMSPMMILTGGPGTGKTTVIQGIVELYGELHGCSLNPKDYKKEE
PFPFLLAAPTGRASKRMAESTGLPAVTIHRLLGWNGSEGFDHHEENPLEGKILIVDETSMVDIWLANQLFKAIPEEMQVI
LVGDEDQLPSVGPGQVLRDLLLSERIPSVMLTDIYRQSEGSSIIELAHEMKKGRLPQNITQQQKDRSFFQCQPGQIGTVI
GQVVRNAKKKGYLAKDIQVLAPMYRGPAGIDRLNKMIQEIFNPNEDGSRKEIAFGDVVYRIGDKVLQLVNQPENHVYNGD
MGEIISIFYAKENTEKQDMVIVSFDGVEATYTKQDLNQITHAYCCSVHKSQGSEFPIVIVPVVKSYYRMLRRNLLYTAIT
RSKQFLILCGDEEALKMGIQRLDDQSRRSNLRLKLQDEIFEGETIEAVDESLTYEDYLMKVDPLIGMENITPYDFLEAD

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=243833 CKF48_RS17340 WP_095372465.1 3410421..3412820(+) (recD2) [Cytobacillus kochii strain BDGP4]
ATGGATGAGCAGAATTCATTAGATTTATTTGCTGAACAAAAAACGTATGTAAAGGGCAAGCATCTTGTGACTATTTTCCA
TAATGAGAGTAATCTTTATACGGTTTTACGTATTCGGGTGCTAGAGACAAATGCACAATATGAAGAGAAAGAAGCGGTCA
TTACTGGCTACATACCGAAAATCCATGAAGAGGAGACCTATACATTTTTAGGGGAATGGAAGGAACATCCAAAGTTTGGG
TTGCAATTCCATGTAGAGCAGTACAAGAAAGAAATGCCTCAAACAAAAGAAGGTGTCGTTAATTATTTATCAGGTGACCT
CTTTAAAGGAATTGGTAAGAAAACGGCACAAAGTATCGTGGACGAGCTTGGAGAAAATGCGATCAATAGCATTTTAAATA
ATCCTTCATTATTAGATGGGATACCAAAATTAGCAAGTGAAAAAGCGAAAGTTTTATACGACACACTTGTGGAGAATCAA
GGAATTGAACAAGTCATGATTCACCTCAATCAACTTGGTTTTGGTCCACAACTATCTATGAAGATTTTTCAAACATATAA
AGATCAAGCAATAGATATTTTGCAAAAAAAACCTTATCAACTCGTAGAGGATATTGAAGGGATTGGCTTCCATCGGGCAG
ATGAGATTGGACAACAAGTGGGAATGTCAGGTAGTCATCCTGACCGTATTAAAGCAGCATGTTTGTATGTGCTTGATAGT
GAAAGTGCACAGGCAGGTCACGTATATGCTGAAGCAGAAGAATTACTCCCTGCTGTCAAAAAACTATTAGAGGAAAAAGC
GACTGAGGTAATCCCTTACGAGGCGATTAGTGAAGCAATCTTAAAGCTCGGAGAAGAGAGAAAAGTGATTGCAGAAGGAC
AGCAGTTATATTTACCTTCTCTTTTCTTTTCTGAAAAGGGAATCGTTACAAATATCAAACGTATACTCAATCAAACGGAA
TTTAATGAACAGTTTCCTGAATCGGAATTCCTCCTTGCTTTGGGACAATTAGAAGAGCGACTTTCGGTACAGTATGCGCC
ATCTCAAAAAGATGCCATTCAAAAAGCGTTAATGTCGCCAATGATGATCTTAACTGGTGGTCCAGGTACGGGCAAAACAA
CGGTTATTCAAGGAATTGTTGAATTGTATGGTGAATTACATGGCTGTAGTTTAAATCCGAAAGACTATAAAAAAGAAGAG
CCTTTTCCTTTCTTATTAGCTGCACCTACTGGAAGAGCTTCGAAAAGAATGGCAGAATCTACAGGATTACCAGCTGTGAC
GATTCACAGATTGCTTGGTTGGAATGGAAGTGAGGGTTTTGACCATCATGAAGAAAACCCGCTTGAAGGGAAAATTCTTA
TTGTTGATGAAACTTCCATGGTTGATATATGGCTAGCCAATCAACTTTTTAAAGCGATCCCTGAAGAAATGCAAGTCATA
CTTGTTGGTGATGAAGATCAATTACCATCTGTGGGCCCAGGTCAAGTATTAAGAGATTTATTACTTTCTGAACGTATCCC
TTCGGTTATGTTGACAGATATTTATAGGCAATCGGAAGGCTCGTCAATTATTGAGTTAGCACATGAAATGAAAAAGGGAA
GATTGCCGCAAAATATTACTCAGCAACAAAAAGACCGTTCCTTTTTTCAATGCCAACCAGGTCAAATTGGCACGGTTATC
GGGCAAGTAGTGCGAAATGCAAAGAAAAAGGGGTATTTAGCAAAGGATATTCAAGTACTTGCACCGATGTATCGTGGTCC
TGCAGGTATTGATCGCCTTAATAAAATGATCCAAGAAATTTTCAACCCTAATGAAGATGGTAGTAGAAAGGAAATTGCTT
TTGGTGATGTTGTCTATCGCATTGGAGACAAGGTGTTGCAATTAGTCAATCAACCTGAAAACCACGTTTATAACGGTGAT
ATGGGTGAAATTATTTCCATATTTTATGCAAAAGAGAACACAGAGAAACAAGATATGGTTATTGTTTCTTTTGACGGAGT
GGAAGCAACGTATACAAAACAGGATTTAAATCAAATCACTCATGCCTATTGTTGTTCCGTTCATAAGTCACAGGGCAGTG
AGTTTCCGATTGTTATTGTTCCGGTCGTTAAAAGTTATTACCGGATGTTACGGAGGAATTTATTATATACTGCCATTACA
CGAAGCAAGCAGTTCCTTATATTATGCGGTGATGAAGAAGCGTTAAAAATGGGTATACAACGATTGGATGATCAATCGAG
GCGATCTAACTTACGATTGAAGTTACAAGATGAAATCTTCGAAGGAGAGACCATTGAAGCTGTAGATGAATCATTAACAT
ATGAAGATTATTTGATGAAAGTCGACCCGTTGATAGGAATGGAAAATATCACACCTTATGATTTTTTAGAGGCTGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-551)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A248TL98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.452

100

0.615

Multiple sequence alignment