Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   C9E59_RS02560 Genome accession   NZ_CP028632
Coordinates   530245..530712 (-) Length   155 a.a.
NCBI ID   WP_000381746.1    Uniprot ID   Q8X892
Organism   Escherichia coli strain 135     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525245..535712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9E59_RS02535 (C9E59_02665) rpsG 525386..525856 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  C9E59_RS02540 (C9E59_02670) fusA 525953..528067 (+) 2115 WP_000124700.1 elongation factor G -
  C9E59_RS02545 (C9E59_02675) tuf 528138..529322 (+) 1185 WP_000031783.1 elongation factor Tu -
  C9E59_RS02550 (C9E59_02685) bfd 529505..529699 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  C9E59_RS02555 (C9E59_02690) bfr 529772..530248 (+) 477 WP_000675516.1 bacterioferritin -
  C9E59_RS02560 (C9E59_02695) pilD 530245..530712 (-) 468 WP_000381746.1 A24 family peptidase Machinery gene
  C9E59_RS02570 (C9E59_02705) rpsJ 531091..531402 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  C9E59_RS02575 (C9E59_02710) rplC 531435..532064 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  C9E59_RS02580 (C9E59_02715) rplD 532075..532680 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  C9E59_RS02585 (C9E59_02720) rplW 532677..532979 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  C9E59_RS02590 (C9E59_02725) rplB 532997..533818 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  C9E59_RS02595 (C9E59_02730) rpsS 533835..534113 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  C9E59_RS02600 (C9E59_02735) rplV 534128..534460 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  C9E59_RS02605 (C9E59_02740) rpsC 534478..535179 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  C9E59_RS02610 (C9E59_02745) rplP 535192..535602 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17099.29 Da        Isoelectric Point: 8.1343

>NTDB_id=243025 C9E59_RS02560 WP_000381746.1 530245..530712(-) (pilD) [Escherichia coli strain 135]
MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCHPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHSWAFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVIGWDSLLIGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=243025 C9E59_RS02560 WP_000381746.1 530245..530712(-) (pilD) [Escherichia coli strain 135]
ATGGACACTACCCTTCCCTTTCTAATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTCATCCTGATGGTTTAGCCG
ATGCGTTATGGGGGGCAATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGCCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGCGCCTGGCATTCATGGGCCTTCTTACCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAATCATTAAAAAACCCGCTGC
CTTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTATAGGCTGGGATAGTTTGCTGATAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8X892

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

43.478

89.032

0.387

Multiple sequence alignment