Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CJZ70_RS11415 Genome accession   NZ_CP022890
Coordinates   2155749..2156528 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain DKU_NT_02     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2150749..2161528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS11385 (CJZ70_11385) fliH 2150767..2151519 (-) 753 WP_014479782.1 flagellar assembly protein FliH -
  CJZ70_RS11390 (CJZ70_11390) fliG 2151512..2152528 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  CJZ70_RS11395 (CJZ70_11395) fliF 2152541..2154151 (-) 1611 WP_046160402.1 flagellar basal-body MS-ring/collar protein FliF -
  CJZ70_RS11400 (CJZ70_11400) fliE 2154197..2154517 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  CJZ70_RS11405 (CJZ70_11405) flgC 2154528..2154980 (-) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  CJZ70_RS11410 (CJZ70_11410) flgB 2154980..2155369 (-) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  CJZ70_RS11415 (CJZ70_11415) codY 2155749..2156528 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CJZ70_RS11420 (CJZ70_11420) hslU 2156568..2157971 (-) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  CJZ70_RS11425 (CJZ70_11425) clpQ 2157988..2158533 (-) 546 WP_046160401.1 ATP-dependent protease subunit ClpQ -
  CJZ70_RS11430 (CJZ70_11430) xerC 2158546..2159460 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  CJZ70_RS11435 (CJZ70_11435) trmFO 2159528..2160835 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=242561 CJZ70_RS11415 WP_003220850.1 2155749..2156528(-) (codY) [Bacillus subtilis strain DKU_NT_02]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=242561 CJZ70_RS11415 WP_003220850.1 2155749..2156528(-) (codY) [Bacillus subtilis strain DKU_NT_02]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCAGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCAGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment