Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CCZ37_RS00445 Genome accession   NZ_CP022741
Coordinates   89900..90601 (-) Length   233 a.a.
NCBI ID   WP_094499489.1    Uniprot ID   A0A223MUF0
Organism   Vibrio qinghaiensis strain Q67     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 84900..95601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ37_RS00415 (CCZ37_00415) gspL 85104..86315 (+) 1212 WP_094499486.1 type II secretion system protein GspL -
  CCZ37_RS00420 (CCZ37_00420) - 86326..86823 (+) 498 WP_094499487.1 type II secretion system protein M -
  CCZ37_RS00425 (CCZ37_00425) - 86820..87578 (+) 759 WP_010319314.1 type II secretion system protein N -
  CCZ37_RS00430 (CCZ37_00430) cysQ 87660..88487 (-) 828 WP_094499488.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CCZ37_RS00435 (CCZ37_00435) nudE 88512..89057 (-) 546 WP_010319312.1 ADP compounds hydrolase NudE -
  CCZ37_RS00440 (CCZ37_00440) nfuA 89213..89800 (-) 588 WP_013855425.1 Fe-S biogenesis protein NfuA -
  CCZ37_RS00445 (CCZ37_00445) comF 89900..90601 (-) 702 WP_094499489.1 phosphoribosyltransferase family protein Machinery gene
  CCZ37_RS00450 (CCZ37_00450) bioH 90748..91512 (+) 765 WP_010319309.1 pimeloyl-ACP methyl ester esterase BioH -
  CCZ37_RS00455 (CCZ37_00455) - 91685..92155 (+) 471 WP_010319308.1 hypothetical protein -
  CCZ37_RS00460 (CCZ37_00460) - 92323..94653 (-) 2331 WP_094499490.1 Tex family protein -
  CCZ37_RS00465 (CCZ37_00465) greB 94997..95479 (+) 483 WP_010319306.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26659.09 Da        Isoelectric Point: 9.6173

>NTDB_id=242042 CCZ37_RS00445 WP_094499489.1 89900..90601(-) (comF) [Vibrio qinghaiensis strain Q67]
MLSHWVQKTITRLVSRQCLLCRLPIETHQTGSWCKTCLTYFAPQPRCQQCGLPTLISVPQCGQCLTNPPPWQRLYCVGDY
VFPLNHTIHQLKYEGQFWQSRHLSALLVPRVDTPAPLITSVPLHWQRRLKRGFNQSALLASQLSQQLGASCDNQLLKRNR
ATPQQQGLSKLQRKKNLKHAFTLRHLPTHKHIALVDDVVTTGSTVQQICQLLLEVGVERIDIYCICRTPEPKD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=242042 CCZ37_RS00445 WP_094499489.1 89900..90601(-) (comF) [Vibrio qinghaiensis strain Q67]
ATGTTATCGCATTGGGTTCAAAAAACCATCACTCGCTTGGTAAGCCGTCAGTGTCTACTGTGTCGTTTACCGATTGAAAC
TCACCAAACTGGGTCTTGGTGCAAGACCTGCCTAACCTATTTTGCACCACAACCTCGCTGCCAACAGTGCGGCCTGCCAA
CGCTTATCAGCGTGCCTCAATGCGGGCAATGTTTAACGAACCCTCCGCCTTGGCAACGCTTATACTGTGTCGGTGACTAT
GTTTTTCCGCTCAATCACACCATTCATCAACTTAAATATGAAGGGCAATTTTGGCAATCTCGCCATTTGAGTGCCTTGCT
TGTCCCAAGGGTTGATACTCCCGCCCCGCTCATCACTAGCGTTCCGCTGCACTGGCAACGGCGCTTAAAACGCGGCTTCA
ATCAAAGTGCACTACTTGCCTCTCAATTAAGTCAACAACTGGGGGCTAGCTGCGATAACCAGTTGCTCAAACGCAATCGC
GCAACGCCCCAGCAGCAAGGGCTTTCTAAATTACAGCGCAAAAAAAATCTCAAACATGCATTCACACTACGGCACCTTCC
CACGCACAAGCACATTGCACTTGTTGACGATGTAGTGACCACGGGCAGTACCGTGCAGCAAATCTGTCAATTACTGCTTG
AAGTCGGTGTCGAAAGGATTGATATTTACTGCATATGCCGCACTCCTGAACCTAAAGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(136-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223MUF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

57.511

100

0.575
  comF Vibrio campbellii strain DS40M4

50.84

100

0.519

Multiple sequence alignment