Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   CJD48_RS09830 Genome accession   NZ_CP022723
Coordinates   2292235..2294118 (-) Length   627 a.a.
NCBI ID   WP_115955585.1    Uniprot ID   -
Organism   Bifidobacterium bifidum strain S6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2287235..2299118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJD48_RS10715 - 2290244..2290978 (-) 735 Protein_1871 ATP-binding cassette domain-containing protein -
  CJD48_RS10720 - 2291150..2292184 (-) 1035 Protein_1872 ABC transporter ATP-binding protein -
  CJD48_RS09830 (CJD48_09800) rcrP 2292235..2294118 (-) 1884 WP_115955585.1 ABC transporter ATP-binding protein Regulator
  CJD48_RS09835 (CJD48_09805) - 2294336..2294866 (-) 531 WP_003817581.1 MarR family transcriptional regulator -
  CJD48_RS09840 (CJD48_09810) - 2295071..2295358 (+) 288 WP_003811585.1 DUF1778 domain-containing protein -
  CJD48_RS09850 (CJD48_09820) - 2295745..2296737 (-) 993 WP_017143196.1 aldo/keto reductase -
  CJD48_RS10530 (CJD48_09825) - 2296973..2297419 (-) 447 WP_080961813.1 DUF5011 domain-containing protein -
  CJD48_RS10725 - 2297399..2297728 (-) 330 Protein_1878 hypothetical protein -
  CJD48_RS09860 (CJD48_09830) - 2298126..2298542 (+) 417 WP_003821717.1 hypothetical protein -

Sequence

Protein


Download         Length: 627 a.a.        Molecular weight: 68154.82 Da        Isoelectric Point: 6.0532

>NTDB_id=241970 CJD48_RS09830 WP_115955585.1 2292235..2294118(-) (rcrP) [Bifidobacterium bifidum strain S6]
MLRILKYLSKAEIGQMLIALVTIVGQVFFDLRLPDYMSDITTLVETPGSAMSDIWIAGGKMLLISLGSVACAIVTGYISA
RVGSSFTQRLRSLEFRKVESYGPAEMSKFSTASLITRSTNDITQIQMFITIGLQLIVKSPIMAVWAICKIAGEGFEWTLA
TGIAVVILLVAVVIMMAMVMPKFKAMQKLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTDTQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLTDKLNVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRVLEVFDTD
PIVKTGTKTAADVARLGGGKTGTVEFRNVSFTYPGSREATLEGIDFTAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAG
QVLVDGVDVREYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDDVNGASSADVEMADTSTPAGRKREAELIAAGKRAEGA
AMPTEQMNRVKAAAGVAQATEFVERMDGTYTAPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVR
DALAKEAKGSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHQELLDTCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1884 bp        

>NTDB_id=241970 CJD48_RS09830 WP_115955585.1 2292235..2294118(-) (rcrP) [Bifidobacterium bifidum strain S6]
ATGCTTCGCATCCTGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCCCTGGTGACCATCGTCGGGCAGGT
CTTCTTCGACCTCAGACTGCCCGATTACATGTCAGACATCACCACGCTCGTCGAGACGCCGGGCAGCGCGATGAGCGACA
TCTGGATCGCCGGCGGCAAGATGCTGCTCATCTCCCTCGGCTCCGTCGCCTGTGCCATCGTCACCGGCTACATCTCCGCA
CGCGTCGGCTCGTCATTCACCCAGCGCCTGCGCTCGCTCGAATTCCGCAAGGTCGAATCCTATGGCCCCGCCGAAATGAG
CAAATTCTCCACCGCGAGCCTCATCACCCGCTCCACCAACGACATCACGCAGATCCAGATGTTCATCACCATCGGCCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCATATGCAAGATCGCCGGCGAAGGTTTCGAATGGACTCTCGCC
ACCGGCATCGCCGTCGTCATCCTGCTCGTCGCCGTCGTCATCATGATGGCCATGGTCATGCCCAAGTTCAAGGCCATGCA
GAAGCTCACCGACAACATCAACCTCGTGGCCCGCGAAAACCTCACCGGCCTGCGCGTCGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGGCCAAGTTCACCAAGGCCAACAAGGACCTCACCGACACGCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCGTCCTGAACGGCCTGATGCTCGCCGTCTACTGGATCGGTGCCTATCTGATCGACGCCGC
CGGCCTGACGGACAAGCTCAACGTGTTCTCCAACATGGTCGTCTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTGATGAGCATGGTATTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAACGCGTGCTCGAAGTGTTCGACACCGAT
CCGATCGTCAAAACCGGCACCAAGACCGCCGCCGACGTGGCGCGTCTGGGCGGCGGGAAAACCGGCACCGTCGAGTTCCG
CAATGTGAGCTTCACCTACCCCGGCTCACGCGAGGCGACGCTCGAAGGCATCGACTTCACCGCCGAAAAGGGCCAGACCG
TCGCGTTCATCGGCTCCACCGGCTCCGGCAAGTCCAGCCTCATCAACCTCGTGCCGCGCTTCTACGACGTGTCGGCCGGG
CAGGTGCTCGTCGACGGTGTGGACGTGCGCGAATACGATCTGAAAGCCCTTCGCGACAAGATCGGATACGTGCCGCAGCA
GTCCGTGCTGTTCAAGGGCACGGTCGCATCCAACGTGAGCTACGGCGACGACGTGAACGGGGCAAGCTCCGCGGACGTCG
AAATGGCCGACACCTCCACTCCGGCCGGCCGCAAACGCGAAGCCGAACTCATCGCCGCGGGCAAGAGAGCGGAAGGCGCC
GCAATGCCGACTGAACAGATGAACCGGGTCAAGGCGGCGGCCGGCGTCGCTCAGGCCACCGAGTTCGTCGAGCGCATGGA
CGGCACATACACCGCCCCGATCGCACAAGGCGGGTCCAACGTCTCCGGCGGCCAGAAGCAGCGCCTGTCAATCGCGCGCG
CCGTCTACCGCCACCCCGAAATCCTGATCTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTTCGC
GACGCACTCGCCAAAGAAGCCAAGGGATCCACCAAGCTCATCGTCGCCCAGCGCATCGGCACGATCATGAACGCCGACCG
CATCATCGTGCTCGATGACGGCAAGGTCGTCGGCCAAGGCACCCATCAGGAACTGCTCGACACCTGCGATGTCTACCGTC
AGATCGCCGAATCCCAGCTCAGTCAGTCGGAACTGACCGCGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-547)

ABC transporter transmembrane region (ABC_membrane)

(18-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

47.253

100

0.48

Multiple sequence alignment