Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ABC_RS08330 Genome accession   NC_006582
Coordinates   1712378..1714663 (+) Length   761 a.a.
NCBI ID   WP_011246432.1    Uniprot ID   Q5WHN2
Organism   Shouchella clausii KSM-K16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1707378..1719663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC_RS08305 (ABC1583) - 1707392..1708654 (-) 1263 WP_011246427.1 replication-associated recombination protein A -
  ABC_RS08310 (ABC1584) - 1708937..1709356 (+) 420 WP_011246428.1 cysteine metabolism transcriptional regulator CymR -
  ABC_RS08315 (ABC1585) - 1709390..1710550 (+) 1161 WP_011246429.1 cysteine desulfurase family protein -
  ABC_RS08320 (ABC1586) mnmA 1710580..1711674 (+) 1095 WP_011246430.1 tRNA 2-thiouridine(34) synthase MnmA -
  ABC_RS08325 (ABC1587) - 1711714..1712373 (+) 660 WP_011246431.1 tetratricopeptide repeat protein -
  ABC_RS08330 (ABC1588) recD2 1712378..1714663 (+) 2286 WP_011246432.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ABC_RS08335 (ABC1589) - 1714714..1715184 (+) 471 WP_011246433.1 PRC-barrel domain-containing protein -
  ABC_RS08340 (ABC1590) - 1715197..1715385 (+) 189 WP_011246434.1 hypothetical protein -
  ABC_RS08345 - 1715406..1715585 (+) 180 WP_035204549.1 hypothetical protein -
  ABC_RS08350 (ABC1591) - 1715680..1716756 (+) 1077 WP_011246435.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 761 a.a.        Molecular weight: 85163.72 Da        Isoelectric Point: 6.0977

>NTDB_id=24170 ABC_RS08330 WP_011246432.1 1712378..1714663(+) (recD2) [Shouchella clausii KSM-K16]
MDNVGEKTLEKGFVKGKVVHVLFRNEENDYTVAMTRIEKTNEQIEGRKITVVGHLPELEVEETYLFFGQVAEHPRFGLQY
KVETFRRDLPQTKSGIIRFLSSDRFPGVGKKTAEAIVDALGERAISAIIEDRTVLNNIPKLKEDTATMLYNQLLEQQGAE
QVIIQLSQYGFGTELSMSVYRTYKLQALDVIRTNPYLLIQDVEGVGFRRADQLGAAIGLTGNHPERLRAGLLYLLRECCM
QQGHLYLQEEALITEGTALLSSPNVQIDASELEAILIEMNEEGMLVREEDRIYMKSLYYAEKGIATNIRRILSQELTQEF
TEADIEKTLGHIEDTHAVTYSNTQKEAIATALRSPLLLLTGGPGTGKTTVIKGIVEAYAALHGLSLEVAAYKNKSFPLKL
TAPTGRASKRMAEATELPASTIHSLLGWKGSATGFEKGDHEQLEGELLIVDEMSMVDAWVANQLFKAIPKGMQVVLVGDE
NQLPSVGPGQVLKDLLEADVIPTIQLKDIYRQAEGSSIIELAHSMKDGVLPSDFLTKKADRVFFPCQPNQVQQAVWQICE
NAMKKGYSAKEIQVLAPMYRGQAGINELNTMLQSLFNPAKEGRRELPFGDVVFRKGDMVLQLVNNPEEGVYNGDRGEIVA
VFYAKETTEKKDQLVVSFDGLEVTYEKKDFSQLTHAYCCSIHKAQGSEFPIVVMPVVSSYMRMLRRNLLYTGITRAKQYL
LLCGDRKTMEQAIKHADEHRHSKLKERLQLLLSRTGNVHRG

Nucleotide


Download         Length: 2286 bp        

>NTDB_id=24170 ABC_RS08330 WP_011246432.1 1712378..1714663(+) (recD2) [Shouchella clausii KSM-K16]
ATGGATAATGTTGGGGAAAAAACGCTGGAGAAAGGTTTTGTTAAAGGAAAAGTCGTTCATGTGTTGTTTCGCAATGAAGA
AAACGATTATACAGTGGCGATGACGCGGATTGAAAAGACGAATGAACAAATAGAAGGGCGCAAAATAACGGTTGTCGGCC
ATTTGCCTGAACTGGAAGTAGAGGAGACCTATTTATTTTTCGGGCAAGTCGCTGAACATCCACGCTTTGGCCTCCAATAC
AAAGTGGAAACGTTTAGGCGCGATTTGCCACAGACGAAAAGCGGAATTATTCGGTTTTTGTCAAGCGACCGTTTCCCTGG
CGTTGGCAAAAAGACAGCGGAAGCAATTGTCGACGCTCTCGGTGAAAGGGCCATTTCAGCTATTATTGAAGATCGAACGG
TATTAAACAACATCCCGAAGCTAAAAGAAGATACAGCGACGATGCTCTATAACCAACTTCTTGAGCAACAAGGCGCGGAG
CAAGTCATTATCCAACTGTCCCAATACGGGTTTGGCACAGAGTTGTCGATGAGTGTTTACCGAACGTACAAATTGCAAGC
ACTTGATGTTATCCGCACCAACCCGTATTTGCTCATTCAGGATGTAGAAGGAGTCGGCTTTCGCCGTGCAGACCAATTAG
GGGCGGCGATTGGCTTAACTGGGAACCATCCAGAGCGTTTGCGGGCGGGGCTGCTTTATTTGCTCCGGGAATGTTGTATG
CAACAAGGACATTTATACTTGCAGGAGGAAGCGCTCATTACGGAGGGGACTGCATTATTATCGAGCCCAAACGTACAAAT
TGACGCTTCCGAGCTTGAGGCCATCCTCATCGAAATGAATGAAGAGGGCATGCTCGTTCGTGAAGAAGACCGCATCTACA
TGAAGTCATTGTATTATGCAGAAAAAGGCATTGCCACCAACATCCGCCGAATTTTAAGCCAAGAACTGACACAAGAATTC
ACTGAAGCAGACATTGAAAAAACACTCGGGCACATTGAGGATACACATGCTGTTACGTATTCAAACACGCAAAAAGAAGC
GATTGCCACTGCTCTTCGTTCTCCGCTGTTGTTGCTGACAGGAGGGCCTGGAACAGGAAAGACTACGGTCATTAAAGGAA
TTGTGGAAGCTTATGCTGCGCTTCATGGGCTTTCTCTTGAAGTGGCTGCTTACAAAAACAAATCTTTCCCCCTTAAGTTG
ACTGCGCCCACTGGTCGAGCCAGCAAACGGATGGCTGAAGCAACGGAACTGCCTGCAAGCACGATACACAGCTTGCTCGG
CTGGAAAGGCAGTGCGACCGGCTTTGAAAAAGGCGACCATGAACAGCTTGAAGGGGAACTGCTAATTGTCGATGAGATGT
CGATGGTCGATGCCTGGGTTGCAAATCAGTTATTTAAAGCGATTCCCAAAGGCATGCAAGTCGTGTTAGTAGGGGATGAA
AACCAGTTGCCTTCTGTAGGGCCTGGCCAAGTATTAAAAGACCTTTTAGAAGCAGACGTTATTCCAACAATCCAATTAAA
GGACATTTACAGGCAAGCTGAAGGCTCTTCCATCATTGAGCTTGCCCACTCGATGAAAGATGGCGTGCTTCCAAGTGATT
TTTTAACGAAAAAGGCAGACCGCGTCTTTTTTCCTTGCCAGCCGAACCAAGTGCAACAAGCAGTTTGGCAAATTTGTGAA
AACGCCATGAAGAAAGGCTACAGTGCTAAGGAGATCCAAGTACTGGCACCCATGTACCGCGGGCAGGCAGGGATCAATGA
ATTAAACACGATGCTTCAGTCCCTATTTAATCCGGCAAAAGAAGGTCGCAGAGAGCTGCCGTTTGGGGATGTTGTTTTTC
GCAAAGGCGATATGGTCCTCCAGTTAGTCAACAATCCAGAGGAAGGCGTATACAACGGCGATAGAGGAGAAATTGTTGCT
GTTTTCTACGCTAAAGAGACGACGGAAAAAAAAGATCAGCTAGTGGTTTCCTTTGACGGACTGGAAGTCACCTATGAGAA
AAAAGACTTTTCACAGCTAACCCATGCCTATTGCTGTTCTATCCATAAAGCACAAGGAAGCGAATTTCCGATTGTGGTGA
TGCCAGTCGTGTCGAGCTACATGCGCATGCTGAGGCGGAACTTGCTTTATACAGGCATTACCCGGGCCAAGCAGTATTTG
CTCTTATGTGGCGATCGAAAAACGATGGAACAGGCGATTAAACATGCAGACGAGCACCGCCATTCCAAATTAAAGGAGCG
CCTTCAACTATTGCTTTCACGTACTGGTAACGTTCACCGGGGATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(155-246)

AAA domain (AAA_30)

(340-540)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-658)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(675-723)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

54.133

98.555

0.534

Multiple sequence alignment