Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ABC_RS08230 Genome accession   NC_006582
Coordinates   1688060..1690417 (+) Length   785 a.a.
NCBI ID   WP_011246412.1    Uniprot ID   Q5WHQ2
Organism   Shouchella clausii KSM-K16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1683060..1695417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC_RS08205 (ABC1562) - 1683133..1683372 (+) 240 WP_011246406.1 hypothetical protein -
  ABC_RS08210 (ABC1563) spoVB 1683409..1684959 (-) 1551 WP_011246407.1 stage V sporulation protein B -
  ABC_RS08215 (ABC1564) - 1685128..1685418 (+) 291 WP_011246408.1 post-transcriptional regulator -
  ABC_RS22625 (ABC1565) secD 1685453..1686754 (+) 1302 WP_011246409.1 protein translocase subunit SecD -
  ABC_RS22630 (ABC1566) secF 1686744..1687679 (+) 936 WP_011246410.1 protein translocase subunit SecF -
  ABC_RS08225 (ABC1567) - 1687695..1687997 (+) 303 WP_011246411.1 LapA family protein -
  ABC_RS08230 (ABC1568) recJ 1688060..1690417 (+) 2358 WP_011246412.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ABC_RS08235 (ABC1569) - 1690407..1690922 (+) 516 WP_011246413.1 adenine phosphoribosyltransferase -
  ABC_RS08240 (ABC1570) - 1691054..1693243 (+) 2190 WP_081427594.1 RelA/SpoT family protein -
  ABC_RS08245 (ABC1571) dtd 1693265..1693705 (+) 441 WP_011246415.1 D-aminoacyl-tRNA deacylase -
  ABC_RS08250 (ABC1572) - 1693932..1694939 (+) 1008 WP_011246416.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87827.50 Da        Isoelectric Point: 4.9867

>NTDB_id=24169 ABC_RS08230 WP_011246412.1 1688060..1690417(+) (recJ) [Shouchella clausii KSM-K16]
MLQSKTRWRILEQNELLAQELADELRVSMLTARLLVRRGIQTVQAAKRFLHYEEPTFYDPFLLKGMEETIERIALAVKRK
ERILVFGDYDADGVSSTSVMLTALQTYGADCDYYIPNRFTEGYGPNCPALDFAKRQGYHLVITVDTGISALNEAAHAKDI
GLDFIITDHHEPPPVLPEALAIINPKQPGCPYPFKELAGVGVAFKVAHALLGRLPEELLDYAVIGTIADLVPLIDENRLL
AKKGLRAIESSGRPGIRALKEVCGMKQEAMDADHIGFAIGPRLNAAGRLDSANPAVELLLADDEEEAKALATEIDSLNKE
RQAIVSKMTEEAIRLVETTYGTKIPHAIVVAKEGWNPGVIGIVASRLVEQFYRPTIVMSIDESSGLAKGSARSIEGFDMY
QELANNRDILPHFGGHPMAAGMTLKTEDIDDLRSRLIKQAKETLTDDMLTPATDIDLVAEVEDVTVQVIGELQALAPFGV
ANRKPIVLVEGAHISDMRRIGSNQNHLKIQFTGAQKPLDGIAFRMGHLFEEITPHAKLSAIGTVSLNEWNGKVKPQLIID
DLAVLEWQLFDWRSIQPNRLNSRLLDLPREKLVAISFQEGTKERLGLDVPVYDYRQAPSFFEAYVVLLDLPSNRVELESL
FSKKGEPSRVYVVFSEEEESFFQTNPNREQFKWYYGFIKKNQRFSLNQLGAKLEKHKGWSARTVEFMTTVFLELGFIKLD
DSIVEAVENPEKKALTASPTYQAKQEKAWLENEFVFASYQQLKEWFQAAIEGSAETKEESILNGL

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=24169 ABC_RS08230 WP_011246412.1 1688060..1690417(+) (recJ) [Shouchella clausii KSM-K16]
ATGTTGCAATCAAAAACAAGATGGCGCATTTTAGAACAAAACGAGCTGTTGGCGCAAGAGCTCGCAGACGAGCTGCGTGT
ATCGATGTTAACGGCCCGTCTTCTTGTACGCCGGGGAATCCAAACCGTCCAGGCGGCCAAGCGCTTTTTACACTACGAAG
AGCCGACGTTTTACGATCCCTTTTTGTTGAAAGGGATGGAGGAAACGATTGAACGAATTGCCCTCGCAGTCAAACGAAAA
GAACGCATTCTTGTTTTTGGGGACTATGATGCTGATGGCGTTAGTTCGACTTCCGTGATGCTAACAGCGTTACAAACGTA
TGGCGCCGACTGTGATTACTATATACCAAACCGTTTTACAGAAGGATACGGGCCCAATTGCCCAGCGCTAGACTTTGCAA
AAAGGCAAGGTTATCACTTAGTGATAACAGTCGATACAGGCATTTCTGCTTTGAATGAAGCTGCCCATGCCAAAGACATC
GGTCTGGATTTTATTATCACTGACCACCATGAGCCGCCGCCGGTTTTGCCAGAAGCATTGGCGATCATTAATCCTAAGCA
GCCTGGTTGCCCGTATCCATTTAAAGAGCTTGCCGGCGTAGGCGTTGCCTTTAAAGTTGCACACGCTTTGCTCGGGCGCC
TGCCTGAAGAGCTGCTCGATTACGCTGTGATCGGCACGATCGCCGACTTGGTGCCTCTCATTGATGAAAATCGGCTGCTG
GCCAAAAAGGGGCTTCGCGCGATTGAATCAAGCGGCCGCCCTGGGATCCGTGCCTTAAAGGAAGTATGCGGCATGAAGCA
GGAAGCAATGGATGCCGACCATATCGGCTTTGCGATTGGCCCTCGTCTAAATGCAGCAGGGCGGCTCGATTCTGCTAATC
CAGCTGTTGAGCTGCTCCTTGCTGATGATGAAGAAGAAGCAAAAGCGCTAGCCACAGAAATCGATAGCCTCAATAAAGAA
CGGCAAGCAATTGTTAGCAAAATGACAGAAGAAGCGATTCGCCTTGTGGAAACAACCTATGGCACAAAGATCCCCCATGC
CATCGTTGTAGCGAAGGAAGGCTGGAATCCAGGGGTCATCGGGATTGTCGCTTCTCGCCTTGTAGAGCAGTTTTACCGTC
CGACAATTGTCATGAGCATTGACGAATCTTCAGGACTTGCCAAAGGCTCGGCCAGAAGCATCGAAGGGTTTGACATGTAC
CAAGAATTGGCGAATAACCGGGATATACTTCCTCATTTTGGCGGACACCCGATGGCGGCAGGGATGACACTTAAAACCGA
GGACATTGACGACTTACGTTCTCGTTTAATCAAGCAAGCCAAGGAGACACTAACGGACGACATGCTTACGCCAGCCACGG
ATATAGACCTCGTTGCAGAAGTGGAGGATGTAACCGTTCAAGTGATTGGCGAGTTGCAGGCACTTGCCCCGTTTGGCGTT
GCCAACCGTAAACCGATTGTACTTGTTGAGGGTGCGCATATTTCCGATATGCGCCGGATTGGCAGCAACCAAAACCATTT
AAAAATCCAATTTACTGGCGCCCAAAAGCCGCTTGACGGAATTGCCTTTAGAATGGGGCATTTGTTTGAAGAGATCACGC
CACATGCAAAGTTATCGGCCATCGGAACGGTATCGTTGAATGAATGGAACGGAAAAGTAAAGCCACAACTTATTATTGAC
GATCTTGCCGTATTGGAGTGGCAACTATTTGATTGGCGCAGCATCCAGCCAAACCGCTTAAACAGCCGGTTGCTTGACTT
GCCTCGTGAAAAACTCGTCGCTATTTCCTTTCAAGAAGGGACAAAAGAAAGACTTGGGTTGGACGTACCCGTATATGATT
ACCGGCAAGCGCCTTCCTTTTTTGAAGCTTACGTCGTGTTGCTCGATTTGCCTAGCAACCGGGTTGAACTGGAAAGTCTT
TTTTCTAAGAAAGGGGAGCCAAGCCGTGTTTATGTTGTGTTCTCTGAGGAAGAAGAATCGTTTTTTCAAACGAACCCAAA
CCGCGAGCAGTTCAAATGGTATTATGGTTTTATAAAGAAAAACCAACGCTTTTCACTGAATCAACTCGGCGCTAAGCTTG
AAAAGCACAAAGGCTGGTCAGCCCGCACGGTCGAATTTATGACCACTGTATTTTTAGAACTTGGTTTTATCAAGCTTGAC
GACAGCATCGTTGAAGCAGTAGAAAACCCTGAAAAAAAAGCGTTGACTGCATCGCCGACCTACCAAGCCAAGCAAGAAAA
AGCATGGCTTGAGAATGAATTTGTTTTTGCTTCTTATCAACAGTTAAAAGAATGGTTCCAGGCTGCCATCGAAGGGAGCG
CTGAAACAAAAGAGGAGTCGATCCTAAATGGATTATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-438)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WHQ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

50.254

100

0.504

Multiple sequence alignment