Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   CIB87_RS21580 Genome accession   NZ_CP022674
Coordinates   4160538..4162895 (-) Length   785 a.a.
NCBI ID   WP_114896808.1    Uniprot ID   A0AA86I6Q6
Organism   Priestia megaterium strain SR7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4155538..4167895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIB87_RS21560 (CIB87_21495) alaS 4155847..4158480 (-) 2634 WP_114896807.1 alanine--tRNA ligase -
  CIB87_RS21565 (CIB87_21500) - 4158869..4159930 (-) 1062 WP_048019728.1 AI-2E family transporter -
  CIB87_RS21570 (CIB87_21505) - 4160045..4160179 (-) 135 WP_013059291.1 YrzQ family protein -
  CIB87_RS21575 (CIB87_21510) - 4160205..4160396 (-) 192 WP_013059292.1 hypothetical protein -
  CIB87_RS21580 (CIB87_21515) recD2 4160538..4162895 (-) 2358 WP_114896808.1 ATP-dependent RecD-like DNA helicase Machinery gene
  CIB87_RS21585 (CIB87_21520) - 4162920..4163579 (-) 660 WP_013085089.1 lipopolysaccharide assembly protein LapB -
  CIB87_RS21590 (CIB87_21525) mnmA 4163737..4164849 (-) 1113 WP_074677603.1 tRNA 2-thiouridine(34) synthase MnmA -
  CIB87_RS21595 (CIB87_21530) - 4164956..4166098 (-) 1143 WP_025750574.1 cysteine desulfurase family protein -
  CIB87_RS21600 (CIB87_21535) cymR 4166122..4166538 (-) 417 WP_013059297.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88864.29 Da        Isoelectric Point: 5.0688

>NTDB_id=241512 CIB87_RS21580 WP_114896808.1 4160538..4162895(-) (recD2) [Priestia megaterium strain SR7]
MNEEQVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVEALGERAIFRILQNESVLKEVPRLSSDKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGVVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQLLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=241512 CIB87_RS21580 WP_114896808.1 4160538..4162895(-) (recD2) [Priestia megaterium strain SR7]
ATGAACGAAGAACAAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCAATTGTAACGGTATTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTTA
CAGGCTATTTTCCTAAGCTGAATGAAGATGAAGTATACACGTTTTACGGAGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAGTTTCATGTTGAACAATTTAAAAAAGAACTTCCGCAATCAAGGCAAGGGGTTGTTCAGTACCTGTCTAGCGATTTATT
TCACGGAATCGGTAAAAAAACCGCTGAAAACATTGTAGAAGCCCTAGGAGAACGCGCTATTTTTCGTATTTTGCAAAATG
AGTCTGTGCTAAAAGAGGTTCCGAGGCTTTCATCCGACAAGGCAGAAGCTTTAGTCACACAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGCTGACAGACCTCGGGTTTGGACCGCAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAAAATAATCCTTATCAGCTCGTAGAAGATATTCAAGGTATTGGCTTTAGCAGGGCCGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAATCATCCTGATCGTTTGCGTGCAGGTATTTTATACGTCATTGAGCAAGAA
TGCAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGAAAAAGCAGACA
TGAAAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATCATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTCTATGCTGAAAAAGGGGTAGTTAAAGCTATTCAAAAAATTATGGCTCAAACGCAGTAT
GAAGAGCAGTTTCCAGAATCAGAATTTTTACTAGCTCTGGGTGAACTAGAAGAGCGATTAGACGTTCAATATGCACCGTC
TCAGCGCAAGGGCATACAAACCGCTTTAATGTCTCCAATGCTTCTTTTAACAGGTGGACCAGGTACTGGGAAAACAACGG
TTATTAAAGGAATAGTCGAACTTTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGACTATAAAAAAGATGAGGCT
TTTCCTGTTTTACTTGTGGCACCTACGGGACGAGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCGGCAGTTACGAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGACCATAACGAGGAGAATCCAATTGACGGAAAATTACTGATTG
TGGATGAAGTATCAATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAGTCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTAAGTTCAGAAGTAGTTCCTAC
CGTCCGTCTGACAGATGTATACAGGCAAGCGGAAGGATCGTCGATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCGAGGCAGCAAGGAGATCGTTCCTTTATTCGCTGTCAAGGACAGCACATCACGAACGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTCTAGCTCCTATGTATAAAGGTCCTGC
AGGGATTGATAAACTGAATGAAGTCCTTCAGGAATTATTTAACCCGGCTTCTGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTCAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTCTCAGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTCATTTCATATGAAGGAAACGAAGT
AACTTATACAAAACAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCACAGGGAAGTGAATTTC
CCATTGTTGTGCTTCCAATTGTCAAAAGCTATTACCGGATGCTGCGACGCAATTTACTTTATACCGCCGTTACGCGAAGC
AAACAGTTTTTAATTTTATGCGGCGAAGACGAAGCGTTTCAGCTTGGAGTCAGCCGAAATGAAGACAGCGTTCGCCAGAC
AAATTTACAGCTCTTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCCGAAATCCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

AAA domain (AAA_30)

(344-551)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

64.066

99.618

0.638

Multiple sequence alignment