Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BaGK_RS09010 Genome accession   NZ_CP022653
Coordinates   1779523..1780302 (+) Length   259 a.a.
NCBI ID   WP_003328951.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1774523..1785302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS08990 (BaGK_08990) trmFO 1775218..1776525 (+) 1308 WP_094232013.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BaGK_RS08995 (BaGK_08995) xerC 1776592..1777506 (+) 915 WP_094232014.1 tyrosine recombinase XerC -
  BaGK_RS09000 (BaGK_09000) clpQ 1777520..1778065 (+) 546 WP_003328953.1 ATP-dependent protease subunit ClpQ -
  BaGK_RS09005 (BaGK_09005) hslU 1778082..1779485 (+) 1404 WP_010788603.1 HslU--HslV peptidase ATPase subunit -
  BaGK_RS09010 (BaGK_09010) codY 1779523..1780302 (+) 780 WP_003328951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BaGK_RS09015 (BaGK_09015) flgB 1780723..1781112 (+) 390 WP_094232015.1 flagellar basal body rod protein FlgB -
  BaGK_RS09020 (BaGK_09020) flgC 1781112..1781561 (+) 450 WP_061670771.1 flagellar basal body rod protein FlgC -
  BaGK_RS09025 (BaGK_09025) fliE 1781572..1781892 (+) 321 WP_003328948.1 flagellar hook-basal body complex protein FliE -
  BaGK_RS09030 (BaGK_09030) fliF 1781936..1783543 (+) 1608 WP_035175119.1 flagellar basal-body MS-ring/collar protein FliF -
  BaGK_RS09035 (BaGK_09035) fliG 1783556..1784572 (+) 1017 WP_003328945.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29042.26 Da        Isoelectric Point: 4.6017

>NTDB_id=241233 BaGK_RS09010 WP_003328951.1 1779523..1780302(+) (codY) [Bacillus atrophaeus strain GQJK17]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=241233 BaGK_RS09010 WP_003328951.1 1779523..1780302(+) (codY) [Bacillus atrophaeus strain GQJK17]
ATGGCTTTATTACAAAAAACAAGAATTATTAATTCCATGCTTCAAGCTGCGGCAGGGAAACCGGTAAACTTTAAAGAAAT
GGCGGAAACACTTCGGGATGTTATTGATTCAAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTGTTAGGTTATTCTATTA
ATCAGCAAATCGAGAACGACCGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCGGAAGAATACACAAAAAACCTATTT
AATATTCCGGAGACTTCTTCTAATCTGGATATTAACAGTGAGTACACAGCGTTTCCGGTCGAAAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTACCTATTATCGGAGGCGGAGAAAGACTTGGAACGCTTATTCTTTCACGCTTGCAGGATC
AATTTGAGGACGATGATCTAATTCTTGCTGAATACGGGGCGACCGTTGTAGGAATGGAAATCCTCAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGCAGCAAAGCTGTAGTTCAAATGGCGATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCGAT
TGAGCACATCTTTGAAGAACTTGACGGAAACGAAGGCCTGCTTGTGGCGAGTAAAATTGCAGACCGCGTCGGCATTACCC
GTTCCGTGATTGTCAATGCACTCAGAAAGCTTGAAAGTGCCGGTGTCATCGAATCGAGATCACTCGGAATGAAGGGCACT
TATATTAAAGTCCTTAATAACAAGTTCTTGATCGAATTAGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment