Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BaGK_RS08980 Genome accession   NZ_CP022653
Coordinates   1771979..1772878 (+) Length   299 a.a.
NCBI ID   WP_094232012.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain GQJK17     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1766979..1777878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaGK_RS08960 (BaGK_08960) - 1767629..1769377 (+) 1749 WP_094232010.1 hypothetical protein -
  BaGK_RS08965 (BaGK_08965) - 1769374..1769655 (+) 282 WP_094232011.1 FlhB-like flagellar biosynthesis protein -
  BaGK_RS08970 (BaGK_08970) sucC 1769829..1770986 (+) 1158 WP_010788598.1 ADP-forming succinate--CoA ligase subunit beta -
  BaGK_RS08975 (BaGK_08975) sucD 1771015..1771917 (+) 903 WP_003328958.1 succinate--CoA ligase subunit alpha -
  BaGK_RS08980 (BaGK_08980) dprA 1771979..1772878 (+) 900 WP_094232012.1 DNA-processing protein DprA Machinery gene
  BaGK_RS08985 (BaGK_08985) topA 1773067..1775142 (+) 2076 WP_010788600.1 type I DNA topoisomerase -
  BaGK_RS08990 (BaGK_08990) trmFO 1775218..1776525 (+) 1308 WP_094232013.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BaGK_RS08995 (BaGK_08995) xerC 1776592..1777506 (+) 915 WP_094232014.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33223.25 Da        Isoelectric Point: 9.5634

>NTDB_id=241232 BaGK_RS08980 WP_094232012.1 1771979..1772878(+) (dprA) [Bacillus atrophaeus strain GQJK17]
MDQASACLLICSINRLLSPSLLLKWWKADPSLSFKTDPHPIHTITSGKIKAAALKTQIEKEYDKLQEQLSDYQRRGIKVF
PITSHQYPSWLKTIYDPPPVLFAKGNENLLIKGRKIGVVGTRNPTAYGKKAVFHLTKELAGNQWIIVSGLAAGIDGLSHR
ACIRAKGYTIGVIAGGFHHIYPRENQQLAEYMAKYHLLLSEHPPETKPQKWHFPMRNRLISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFDPYSGGPIKLIQEGAKSVQSAEDIYSELSEGNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=241232 BaGK_RS08980 WP_094232012.1 1771979..1772878(+) (dprA) [Bacillus atrophaeus strain GQJK17]
TTGGATCAGGCGTCTGCCTGTTTACTCATTTGCAGCATTAACCGTTTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
GGCTGATCCGTCTCTTTCTTTTAAGACTGATCCGCACCCAATACACACCATCACTTCCGGTAAAATAAAAGCCGCCGCGC
TTAAAACTCAAATAGAGAAAGAATATGATAAGCTTCAAGAACAGCTGTCTGACTATCAACGGCGAGGTATCAAAGTCTTT
CCGATCACTTCACATCAATACCCGTCATGGCTGAAAACGATCTATGATCCGCCTCCCGTTTTGTTTGCCAAAGGGAATGA
GAACCTGCTCATAAAAGGCCGGAAAATTGGAGTGGTAGGTACGCGAAATCCTACCGCATATGGCAAAAAAGCAGTTTTTC
ATCTTACAAAAGAGCTTGCAGGCAACCAGTGGATCATTGTAAGCGGACTCGCGGCCGGAATAGACGGTTTGTCCCATAGA
GCCTGCATCAGGGCAAAAGGGTATACAATCGGTGTCATAGCAGGCGGTTTTCATCATATATATCCCCGAGAAAATCAGCA
GTTAGCAGAATACATGGCGAAGTATCATCTGCTGCTGTCAGAACATCCACCGGAAACAAAACCCCAAAAATGGCATTTTC
CCATGAGAAACCGTTTAATAAGCGGGTTGTCCGAAGGCATAGTGGTAGTGCAAGGCAAAGAAAAAAGTGGTTCGTTAATC
ACTGCCTATCAAGCGCTTGACCAGGGCAGGGAGGTGTTTGCCGTGCCTGGTTCTATATTTGATCCATACTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCAAAATCTGTACAGTCCGCTGAGGATATTTACAGTGAGTTATCGGAGGGAAACGTTC
AATATACGGAACCCTTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

73.913

100

0.739

Multiple sequence alignment