Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   Sp14A_RS01475 Genome accession   NZ_CP022601
Coordinates   274422..275357 (+) Length   311 a.a.
NCBI ID   WP_115129660.1    Uniprot ID   A0A345VHQ4
Organism   Streptococcus pluranimalium strain 14A0014     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 269422..280357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sp14A_RS01455 (Sp14A_02990) - 269629..271290 (+) 1662 WP_115129657.1 peptide ABC transporter substrate-binding protein -
  Sp14A_RS01460 (Sp14A_03000) - 271405..272319 (+) 915 WP_104967234.1 ABC transporter permease -
  Sp14A_RS01465 (Sp14A_03010) - 272330..273361 (+) 1032 WP_115129658.1 ABC transporter permease -
  Sp14A_RS01470 (Sp14A_03020) oppD 273376..274422 (+) 1047 WP_115129659.1 ABC transporter ATP-binding protein Regulator
  Sp14A_RS01475 (Sp14A_03030) amiF 274422..275357 (+) 936 WP_115129660.1 ATP-binding cassette domain-containing protein Regulator
  Sp14A_RS01480 (Sp14A_03040) - 275549..277069 (-) 1521 WP_115129661.1 IS1182 family transposase -
  Sp14A_RS01485 - 277328..278280 (-) 953 Protein_257 IS30 family transposase -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 35231.20 Da        Isoelectric Point: 6.8343

>NTDB_id=241043 Sp14A_RS01475 WP_115129660.1 274422..275357(+) (amiF) [Streptococcus pluranimalium strain 14A0014]
MKNNRKKLVELKNVSLTFNKGKSNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGEKVSHL
KGKAQHNFRKQAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVSTKEERDEKVQHLLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVEPKFIIADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFVAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTKSLLSAIPEPDPEKERARVHQVYDPTAELDGQERTMHEITPGHFVLATEEEAQLYKEQLQK

Nucleotide


Download         Length: 936 bp        

>NTDB_id=241043 Sp14A_RS01475 WP_115129660.1 274422..275357(+) (amiF) [Streptococcus pluranimalium strain 14A0014]
ATGAAAAATAACAGAAAAAAATTAGTTGAACTAAAAAATGTTTCCCTCACTTTTAACAAAGGGAAATCTAATGAAGTTAA
AGCCATTAATAATGTTAGTTTTGACATCTATGAAGGTGAAGTTTTTGGTTTAGTTGGTGAGTCTGGTTCAGGTAAAACAA
CCGTTGGTCGTGCTATTTTGAAACTGTATGATATTAACGAAGGAGAAATTATCTTTAATGGTGAAAAAGTCTCACATTTA
AAAGGTAAAGCTCAACATAATTTCCGTAAGCAAGCTCAAATGATTTTCCAAGATCCGCAAGCAAGTCTTAATGGACGTAT
GAAAATCCGTGATATTGTTGCTGAAGGATTGGACATCCATAAGTTGGTTTCAACCAAGGAAGAACGTGATGAAAAAGTTC
AACACCTTCTTGATTTAGTTGGTTTAAATAAAGATCACTTAACACGTTATCCTCATGAGTTTTCTGGTGGACAACGTCAG
CGTATCGGTATTGCCCGTGCTCTTGCTGTTGAACCGAAATTTATCATTGCCGATGAACCAATTTCAGCGTTGGATGTTTC
TATTCAAGCCCAAGTTGTTAATTTAATGCAAAAATTACAACATGAGCAAGGCTTGACATATCTCTTTGTTGCTCACGATT
TATCAATGGTTAAATATATCTCAGACCGTATTGGTGTTATGCACTGGGGTAAAATGTTAGAAATTGGAACATCTGAAGAT
GTTTATAATAATCCGATTCATCCTTATACAAAGAGTTTATTGTCAGCTATTCCAGAACCGGATCCTGAAAAAGAACGTGC
CCGTGTTCATCAAGTCTATGATCCAACAGCAGAATTGGATGGACAAGAACGCACTATGCATGAAATCACACCAGGTCATT
TTGTTCTTGCCACAGAAGAAGAAGCACAGCTCTATAAAGAACAATTGCAAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345VHQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.896

99.035

0.534
  amiF Streptococcus thermophilus LMG 18311

53.571

99.035

0.531
  amiF Streptococcus salivarius strain HSISS4

53.571

99.035

0.531

Multiple sequence alignment