Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   FORC62_RS08945 Genome accession   NZ_CP022582
Coordinates   1726869..1727939 (-) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FORC_062     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1721869..1732939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC62_RS08905 (FORC62_1631) gcvPA 1722046..1723392 (-) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  FORC62_RS08910 (FORC62_1632) gcvT 1723412..1724503 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  FORC62_RS08915 (FORC62_1633) - 1724662..1725186 (-) 525 WP_001015120.1 shikimate kinase -
  FORC62_RS08920 - 1725176..1725322 (-) 147 WP_001792109.1 hypothetical protein -
  FORC62_RS08925 (FORC62_1634) comGF 1725419..1725916 (-) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  FORC62_RS08930 (FORC62_1635) comGE 1725834..1726133 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  FORC62_RS08935 (FORC62_1636) comGD 1726120..1726566 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  FORC62_RS08940 (FORC62_1637) comGC 1726544..1726855 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  FORC62_RS08945 (FORC62_1638) comGB 1726869..1727939 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  FORC62_RS08950 (FORC62_1639) comGA 1727911..1728885 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  FORC62_RS08955 (FORC62_1640) - 1728937..1729560 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  FORC62_RS08960 (FORC62_1641) - 1729557..1729886 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  FORC62_RS08965 (FORC62_1642) - 1729886..1730872 (-) 987 WP_000161311.1 ROK family glucokinase -
  FORC62_RS08970 (FORC62_1643) - 1730869..1731072 (-) 204 WP_000087558.1 YqgQ family protein -
  FORC62_RS08975 (FORC62_1644) - 1731053..1732516 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=240991 FORC62_RS08945 WP_000776422.1 1726869..1727939(-) (comGB) [Staphylococcus aureus strain FORC_062]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=240991 FORC62_RS08945 WP_000776422.1 1726869..1727939(-) (comGB) [Staphylococcus aureus strain FORC_062]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1

Multiple sequence alignment