Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CF389_RS06280 Genome accession   NZ_CP022556
Coordinates   1328763..1329542 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain NJAU-Z9     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1323763..1334542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF389_RS06250 fliH 1323807..1324562 (-) 756 WP_003154255.1 flagellar assembly protein FliH -
  CF389_RS06255 fliG 1324555..1325571 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  CF389_RS06260 fliF 1325584..1327194 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  CF389_RS06265 fliE 1327237..1327557 (-) 321 WP_003154258.1 flagellar hook-basal body complex protein FliE -
  CF389_RS06270 flgC 1327568..1328020 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  CF389_RS06275 flgB 1328020..1328409 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  CF389_RS06280 codY 1328763..1329542 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CF389_RS06285 hslU 1329580..1330983 (-) 1404 WP_003154265.1 HslU--HslV peptidase ATPase subunit -
  CF389_RS06290 hslV 1331000..1331545 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  CF389_RS06295 xerC 1331561..1332478 (-) 918 WP_003154270.1 tyrosine recombinase XerC -
  CF389_RS06300 trmFO 1332548..1333855 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=240713 CF389_RS06280 WP_003154263.1 1328763..1329542(-) (codY) [Bacillus velezensis strain NJAU-Z9]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=240713 CF389_RS06280 WP_003154263.1 1328763..1329542(-) (codY) [Bacillus velezensis strain NJAU-Z9]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment