Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   C7M30_RS04540 Genome accession   NZ_CP028218
Coordinates   850535..851452 (-) Length   305 a.a.
NCBI ID   WP_160244038.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102756     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 845535..856452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS04515 (C7M30_00907) spx 845893..846288 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  C7M30_RS04520 (C7M30_00908) yjbC 846469..847047 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  C7M30_RS04525 (C7M30_00909) yjbB 847211..848428 (-) 1218 WP_160244995.1 MFS transporter -
  C7M30_RS04530 (C7M30_00910) oppF 848535..849452 (-) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  C7M30_RS04535 (C7M30_00911) oppD 849454..850530 (-) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  C7M30_RS04540 (C7M30_00912) amiD 850535..851452 (-) 918 WP_160244038.1 oligopeptide ABC transporter permease OppC Regulator
  C7M30_RS04545 (C7M30_00913) oppB 851456..852391 (-) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  C7M30_RS04550 (C7M30_00914) oppA 852499..854136 (-) 1638 WP_160244039.1 oligopeptide ABC transporter substrate-binding protein OppA -
  C7M30_RS04555 (C7M30_00915) trpS 854880..855872 (+) 993 WP_003245134.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33589.06 Da        Isoelectric Point: 10.2873

>NTDB_id=240474 C7M30_RS04540 WP_160244038.1 850535..851452(-) (amiD) [Bacillus subtilis strain SRCM102756]
MQNIPKNMFEPAAGNAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPIFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=240474 C7M30_RS04540 WP_160244038.1 850535..851452(-) (amiD) [Bacillus subtilis strain SRCM102756]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGGGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCCATTTTTGCGCCGATATTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCATCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.599

100

0.361
  amiD Streptococcus thermophilus LMD-9

35.599

100

0.361