Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CG798_RS13880 Genome accession   NZ_CP022531
Coordinates   2690104..2690883 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain TB1501     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2685104..2695883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG798_RS13860 (CG798_13865) trmFO 2685791..2687098 (+) 1308 WP_094031705.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CG798_RS13865 (CG798_13870) xerC 2687168..2688085 (+) 918 WP_032871470.1 tyrosine recombinase XerC -
  CG798_RS13870 (CG798_13875) hslV 2688101..2688646 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  CG798_RS13875 (CG798_13880) hslU 2688663..2690066 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  CG798_RS13880 (CG798_13885) codY 2690104..2690883 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CG798_RS13885 (CG798_13890) flgB 2691237..2691626 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  CG798_RS13890 (CG798_13895) flgC 2691626..2692078 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  CG798_RS13895 (CG798_13900) fliE 2692089..2692409 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  CG798_RS13900 (CG798_13905) fliF 2692452..2694062 (+) 1611 WP_076424137.1 flagellar basal-body MS-ring/collar protein FliF -
  CG798_RS13905 (CG798_13910) fliG 2694075..2695091 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  CG798_RS13910 (CG798_13915) fliH 2695084..2695839 (+) 756 WP_015239852.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=240425 CG798_RS13880 WP_003154263.1 2690104..2690883(+) (codY) [Bacillus velezensis strain TB1501]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=240425 CG798_RS13880 WP_003154263.1 2690104..2690883(+) (codY) [Bacillus velezensis strain TB1501]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACACTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment