Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   C7M27_RS12925 Genome accession   NZ_CP028213
Coordinates   2478971..2479888 (-) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain SRCM102749     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2473971..2484888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS12900 (C7M27_02548) spx 2474329..2474724 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  C7M27_RS12905 (C7M27_02549) yjbC 2474905..2475483 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  C7M27_RS12910 (C7M27_02550) yjbB 2475647..2476864 (-) 1218 WP_128740216.1 MFS transporter -
  C7M27_RS12915 (C7M27_02551) oppF 2476971..2477888 (-) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  C7M27_RS12920 (C7M27_02552) oppD 2477890..2478966 (-) 1077 WP_128740215.1 oligopeptide ABC transporter ATP-binding protein OppD -
  C7M27_RS12925 (C7M27_02553) amiD 2478971..2479888 (-) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  C7M27_RS12930 (C7M27_02554) oppB 2479892..2480827 (-) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  C7M27_RS12935 (C7M27_02555) oppA 2480934..2482571 (-) 1638 WP_021479550.1 oligopeptide ABC transporter substrate-binding protein OppA -
  C7M27_RS12940 (C7M27_02556) trpS 2483315..2484307 (+) 993 WP_003245134.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=240077 C7M27_RS12925 WP_003232954.1 2478971..2479888(-) (amiD) [Bacillus subtilis strain SRCM102749]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=240077 C7M27_RS12925 WP_003232954.1 2478971..2479888(-) (amiD) [Bacillus subtilis strain SRCM102749]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGATGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGCGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364