Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CG450_RS13205 Genome accession   NZ_CP022477
Coordinates   2495671..2496450 (-) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis strain BL-010     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2490671..2501450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG450_RS13175 fliH 2490712..2491479 (-) 768 WP_009328518.1 flagellar assembly protein FliH -
  CG450_RS13180 fliG 2491463..2492479 (-) 1017 WP_003181768.1 flagellar motor switch protein FliG -
  CG450_RS13185 fliF 2492493..2494094 (-) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  CG450_RS13190 fliE 2494145..2494462 (-) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  CG450_RS13195 flgC 2494476..2494928 (-) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  CG450_RS13200 flgB 2494928..2495317 (-) 390 WP_003181758.1 flagellar basal body rod protein FlgB -
  CG450_RS13205 codY 2495671..2496450 (-) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CG450_RS13210 hslU 2496489..2497892 (-) 1404 WP_003181754.1 HslU--HslV peptidase ATPase subunit -
  CG450_RS13215 hslV 2497909..2498454 (-) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  CG450_RS13220 xerC 2498468..2499382 (-) 915 WP_011197974.1 tyrosine recombinase XerC -
  CG450_RS13225 trmFO 2499449..2500753 (-) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=239896 CG450_RS13205 WP_003181756.1 2495671..2496450(-) (codY) [Bacillus licheniformis strain BL-010]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=239896 CG450_RS13205 WP_003181756.1 2495671..2496450(-) (codY) [Bacillus licheniformis strain BL-010]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment