Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   CG450_RS09095 Genome accession   NZ_CP022477
Coordinates   1735636..1736670 (+) Length   344 a.a.
NCBI ID   WP_075218359.1    Uniprot ID   -
Organism   Bacillus licheniformis strain BL-010     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1730636..1741670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG450_RS09055 - 1731135..1731449 (+) 315 WP_003183487.1 MTH1187 family thiamine-binding protein -
  CG450_RS09060 - 1731510..1731683 (-) 174 WP_003183486.1 DUF2759 domain-containing protein -
  CG450_RS09065 - 1731839..1732477 (+) 639 WP_003183485.1 MBL fold metallo-hydrolase -
  CG450_RS09070 - 1732515..1732760 (-) 246 WP_003183483.1 DUF2626 domain-containing protein -
  CG450_RS09075 - 1732969..1733328 (+) 360 Protein_1793 Spx/MgsR family RNA polymerase-binding regulatory protein -
  CG450_RS09085 - 1733586..1734425 (+) 840 WP_003183480.1 STAS domain-containing protein -
  CG450_RS09090 comGA 1734582..1735646 (+) 1065 WP_003183477.1 competence type IV pilus ATPase ComGA Machinery gene
  CG450_RS09095 comGB 1735636..1736670 (+) 1035 WP_075218359.1 competence type IV pilus assembly protein ComGB Machinery gene
  CG450_RS09100 comGC 1736684..1736977 (+) 294 WP_003183466.1 competence type IV pilus major pilin ComGC Machinery gene
  CG450_RS09105 comGD 1736983..1737420 (+) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -
  CG450_RS09110 comGE 1737404..1737751 (+) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  CG450_RS09115 comGF 1737777..1738148 (+) 372 WP_003183461.1 competence type IV pilus minor pilin ComGF -
  CG450_RS09120 comGG 1738161..1738526 (+) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  CG450_RS09125 - 1738615..1738797 (+) 183 WP_003183456.1 YqzE family protein -
  CG450_RS09130 - 1738821..1739141 (-) 321 WP_003183454.1 YqzG/YhdC family protein -
  CG450_RS09135 tapA 1739418..1740146 (+) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  CG450_RS09140 sipW 1740143..1740727 (+) 585 WP_003183449.1 signal peptidase I SipW -
  CG450_RS09145 tasA 1740801..1741595 (+) 795 WP_003183447.1 biofilm matrix protein TasA -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39786.00 Da        Isoelectric Point: 9.3543

>NTDB_id=239885 CG450_RS09095 WP_075218359.1 1735636..1736670(+) (comGB) [Bacillus licheniformis strain BL-010]
MKIKMKWPVREQADLLKKLGDMMQSGYTILDALSMLKLQLNERRRADLTFAMEKLTEGCPVFQVLEMISFHKDAVTIVYF
AEQHGNLPFAFRQSGELLHRKIAQSEKLKKAARYPLFLVLTFCVIISIMKSAIVPQFSAIYESMNVETSFATTLIFYVFD
HFYLFFAGLPLVAAALSLYYLCSFRHKPPEDKMAFLITIPLLGQTFKLFNSYFLSLQLSNLLQAGLSVYDSLKAFESQPF
LRFHKNEAKRLIERLKQGESLEQMLAGHPFYENDLAKAVAHGQLNGHLYRELYSYSQFLIERLERKAEKWTGLIQPLIYG
LTAAMILILYLSMLLPMYQMMNQL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=239885 CG450_RS09095 WP_075218359.1 1735636..1736670(+) (comGB) [Bacillus licheniformis strain BL-010]
ATGAAGATTAAAATGAAGTGGCCTGTCCGGGAACAGGCGGACCTTCTGAAAAAACTAGGAGACATGATGCAGAGTGGCTA
TACGATTTTGGATGCTTTAAGTATGCTGAAATTGCAATTGAATGAAAGACGAAGAGCGGATCTGACATTTGCGATGGAGA
AGCTGACAGAAGGGTGTCCTGTGTTTCAAGTTCTTGAAATGATTTCCTTTCACAAGGATGCTGTCACCATTGTTTACTTT
GCCGAACAGCACGGGAATTTGCCATTTGCCTTTAGGCAGAGCGGAGAGCTGCTTCACCGCAAGATCGCTCAAAGCGAAAA
ATTAAAGAAAGCCGCCAGATACCCCTTGTTTTTAGTTTTAACGTTCTGCGTCATCATCTCTATTATGAAATCAGCAATAG
TTCCGCAATTTTCCGCCATCTATGAATCGATGAACGTTGAAACGTCTTTTGCAACGACTCTCATCTTTTATGTTTTCGAT
CACTTTTATCTTTTTTTCGCGGGACTGCCGCTGGTTGCCGCAGCTCTATCCCTCTATTATCTGTGTTCATTCCGCCATAA
ACCTCCAGAAGACAAAATGGCCTTTCTCATTACAATTCCCTTGCTGGGCCAAACCTTCAAACTATTCAACAGCTATTTTT
TATCGCTCCAGCTGAGCAATCTTTTGCAAGCGGGTCTGTCTGTATATGACAGTTTAAAAGCATTTGAAAGCCAGCCGTTT
TTACGATTTCATAAAAATGAAGCGAAGCGCTTGATCGAGCGGCTGAAACAGGGGGAGAGTCTGGAGCAGATGCTGGCCGG
ACATCCGTTTTATGAAAATGATTTAGCAAAGGCTGTTGCACACGGCCAACTAAATGGGCACTTATACAGAGAGCTGTATT
CATATAGTCAGTTTTTGATTGAGCGGCTTGAAAGAAAGGCCGAAAAATGGACAGGCCTGATCCAGCCATTGATTTACGGG
CTAACCGCGGCGATGATATTAATTCTTTATTTGTCCATGCTTTTGCCAATGTATCAAATGATGAACCAGCTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(216-336)

Type II secretion system (T2SS), protein F (T2SSF)

(16-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

56.347

93.895

0.529

Multiple sequence alignment