Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   CGZ47_RS08995 Genome accession   NZ_CP022475
Coordinates   1716782..1717189 (-) Length   135 a.a.
NCBI ID   WP_089542349.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain KG6     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1717216..1718145 1716782..1717189 flank 27


Gene organization within MGE regions


Location: 1716782..1718145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ47_RS08995 (CGZ47_08995) sigH 1716782..1717189 (-) 408 WP_089542349.1 hypothetical protein Regulator
  CGZ47_RS09000 (CGZ47_09000) - 1717216..1718145 (+) 930 WP_065825252.1 IS30-like element ISLpl1 family transposase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15880.46 Da        Isoelectric Point: 8.5917

>NTDB_id=239849 CGZ47_RS08995 WP_089542349.1 1716782..1717189(-) (sigH) [Latilactobacillus curvatus strain KG6]
MVNTILKEADLFCPNSVRINFTIYRFYKLRFHHHVLNLIRKELAQKRRVDQQALLFDCCPECNALAEDTVAYYQSTVEMR
AYLETLSALELVAFRVLTGQLAVEQACSQLDCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 408 bp        

>NTDB_id=239849 CGZ47_RS08995 WP_089542349.1 1716782..1717189(-) (sigH) [Latilactobacillus curvatus strain KG6]
GTGGTAAACACCATTTTAAAGGAAGCTGATCTTTTTTGTCCGAACAGCGTTCGGATTAATTTTACAATCTACCGTTTTTA
TAAATTACGCTTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGGTCGATCAGCAAGCCC
TGTTATTTGATTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTGGCATACTATCAGTCAACGGTTGAAATGCGG
GCGTACTTAGAGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAGCAAGCGTG
TAGCCAGCTAGATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTA
AACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

68.224

79.259

0.541

Multiple sequence alignment