Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CG015_RS02015 Genome accession   NZ_CP022468
Coordinates   426596..427297 (-) Length   233 a.a.
NCBI ID   WP_129532162.1    Uniprot ID   -
Organism   Vibrio anguillarum strain MHK3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 421596..432297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG015_RS01985 (CG015_01970) gspL 421801..423012 (+) 1212 WP_129532161.1 type II secretion system protein GspL -
  CG015_RS01990 (CG015_01975) - 423023..423520 (+) 498 WP_013855429.1 type II secretion system protein M -
  CG015_RS01995 (CG015_01980) - 423517..424275 (+) 759 WP_019282844.1 type II secretion system protein N -
  CG015_RS02000 (CG015_01985) cysQ 424357..425184 (-) 828 WP_010319313.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CG015_RS02005 (CG015_01990) nudE 425209..425754 (-) 546 WP_064624176.1 ADP compounds hydrolase NudE -
  CG015_RS02010 (CG015_01995) nfuA 425909..426496 (-) 588 WP_013855425.1 Fe-S biogenesis protein NfuA -
  CG015_RS02015 (CG015_02000) comF 426596..427297 (-) 702 WP_129532162.1 phosphoribosyltransferase family protein Machinery gene
  CG015_RS02020 (CG015_02005) bioH 427444..428208 (+) 765 WP_129532163.1 pimeloyl-ACP methyl ester esterase BioH -
  CG015_RS02025 (CG015_02010) - 428476..428946 (+) 471 WP_026027513.1 hypothetical protein -
  CG015_RS02030 (CG015_02015) - 429096..431426 (-) 2331 WP_094149172.1 Tex family protein -
  CG015_RS02035 (CG015_02020) greB 431770..432252 (+) 483 WP_010319306.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26673.07 Da        Isoelectric Point: 9.6283

>NTDB_id=239701 CG015_RS02015 WP_129532162.1 426596..427297(-) (comF) [Vibrio anguillarum strain MHK3]
MLSHWVQKTITRLVSRQCLLCRLPIETHQTGAWCKTCLTYFAPQPRCQQCGLPTLITVPQCGQCLANPPPWQRLYCVGDY
IFPLSHTIHQLKYEGQFWQSRHLSALLTPRIDTPAPLITSVPLHWQRRLKRGFNQSALLASQLSQQLGASCDNQLIKRNR
ATPQQQGLSKLQRKQNLKHAFTLRHRPTHKHIALVDDVVTTGSTVQQICQLLLEVGVERIDIYCICRTPEPKD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=239701 CG015_RS02015 WP_129532162.1 426596..427297(-) (comF) [Vibrio anguillarum strain MHK3]
ATGTTATCGCATTGGGTTCAAAAAACCATCACTCGCTTGGTAAGCCGTCAGTGTCTACTGTGTCGTTTACCGATTGAAAC
TCACCAAACTGGGGCTTGGTGTAAGACCTGCCTAACCTATTTTGCACCGCAACCTCGCTGCCAACAGTGCGGCCTGCCAA
CGCTTATTACCGTGCCTCAATGTGGGCAATGTTTAGCGAATCCTCCGCCTTGGCAACGCCTATACTGTGTCGGCGACTAT
ATTTTTCCGCTCAGTCACACCATTCATCAACTCAAATATGAAGGTCAATTTTGGCAATCTCGCCATTTGAGTGCCTTACT
GACGCCACGTATCGACACTCCCGCCCCGCTCATCACTAGCGTTCCGTTACACTGGCAACGGCGCTTAAAACGCGGCTTCA
ATCAAAGTGCACTACTTGCCTCTCAATTAAGTCAACAACTGGGGGCTAGCTGCGATAACCAGTTGATCAAACGCAATCGC
GCAACGCCCCAGCAGCAAGGGCTTTCTAAATTACAGCGCAAACAAAATCTCAAACATGCATTCACACTACGGCACCGTCC
CACGCACAAGCACATTGCACTTGTTGACGATGTAGTGACCACGGGCAGCACCGTGCAGCAAATCTGTCAATTACTGCTTG
AAGTCGGTGTCGAAAGGATTGATATTTACTGCATATGCCGCACTCCTGAACCTAAAGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(136-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

58.369

100

0.584
  comF Vibrio campbellii strain DS40M4

51.681

100

0.528

Multiple sequence alignment