Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   C7M17_RS09565 Genome accession   NZ_CP028202
Coordinates   1791471..1792388 (-) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain SRCM102754     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1786471..1797388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS09540 (C7M17_01890) spx 1786829..1787224 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  C7M17_RS09545 (C7M17_01891) yjbC 1787405..1787983 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  C7M17_RS09550 (C7M17_01892) yjbB 1788147..1789364 (-) 1218 WP_122895145.1 MFS transporter -
  C7M17_RS09555 (C7M17_01893) oppF 1789471..1790388 (-) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  C7M17_RS09560 (C7M17_01894) oppD 1790390..1791466 (-) 1077 WP_122895146.1 oligopeptide ABC transporter ATP-binding protein OppD -
  C7M17_RS09565 (C7M17_01895) amiD 1791471..1792388 (-) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  C7M17_RS09570 (C7M17_01896) oppB 1792392..1793327 (-) 936 WP_122895147.1 oligopeptide ABC transporter permease OppB -
  C7M17_RS09575 (C7M17_01897) oppA 1793434..1795071 (-) 1638 WP_122895148.1 oligopeptide ABC transporter substrate-binding protein OppA -
  C7M17_RS09580 (C7M17_01898) trpS 1795814..1796806 (+) 993 WP_003245134.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=239600 C7M17_RS09565 WP_003232954.1 1791471..1792388(-) (amiD) [Bacillus subtilis strain SRCM102754]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=239600 C7M17_RS09565 WP_003232954.1 1791471..1792388(-) (amiD) [Bacillus subtilis strain SRCM102754]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATTGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGGCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364