Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   C7M17_RS07655 Genome accession   NZ_CP028202
Coordinates   1439748..1440197 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SRCM102754     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1434748..1445197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS07625 (C7M17_01504) sepM 1434827..1435852 (-) 1026 WP_029317763.1 protease DdcP Regulator
  C7M17_RS07630 (C7M17_01505) ylbK 1435854..1436636 (-) 783 WP_003232221.1 patatin family protein -
  C7M17_RS07635 (C7M17_01506) spoVV 1436817..1438043 (+) 1227 WP_087614544.1 dipicolinic acid transporter SpoVV -
  C7M17_RS07640 (C7M17_01507) coaD 1438054..1438539 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  C7M17_RS07645 (C7M17_01508) rsmD 1438544..1439098 (-) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C7M17_RS07650 (C7M17_01509) ylbG 1439421..1439693 (-) 273 WP_160245240.1 YlbG family protein -
  C7M17_RS07655 (C7M17_01510) ylbF 1439748..1440197 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  C7M17_RS07660 (C7M17_01511) ylbE 1440313..1440552 (-) 240 WP_124059825.1 YlbE-like family protein -
  C7M17_RS07665 (C7M17_01512) ylbD 1440568..1440966 (-) 399 WP_014476725.1 YlbD family protein -
  C7M17_RS07670 (C7M17_01513) ylbC 1441198..1442238 (-) 1041 WP_134155383.1 CAP domain-containing protein -
  C7M17_RS07675 (C7M17_01514) ylbB 1442322..1442768 (-) 447 WP_003221362.1 CBS domain-containing protein -
  C7M17_RS07680 (C7M17_01515) ylbA 1442908..1443270 (+) 363 WP_080474471.1 YugN family protein -
  C7M17_RS07685 (C7M17_01516) ctaG 1443302..1444195 (-) 894 WP_160245241.1 cytochrome c oxidase assembly factor CtaG -
  C7M17_RS07690 (C7M17_01517) ctaF 1444223..1444555 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  C7M17_RS07695 (C7M17_01518) ctaE 1444558..1445181 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=239585 C7M17_RS07655 WP_003221370.1 1439748..1440197(-) (ylbF) [Bacillus subtilis strain SRCM102754]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=239585 C7M17_RS07655 WP_003221370.1 1439748..1440197(-) (ylbF) [Bacillus subtilis strain SRCM102754]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1