Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CGZ63_RS19755 Genome accession   NZ_CP022445
Coordinates   3752497..3753276 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus C1L     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3727205..3788962 3752497..3753276 within 0


Gene organization within MGE regions


Location: 3727205..3788962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ63_RS19645 - 3727775..3728674 (-) 900 WP_000868217.1 polysaccharide deacetylase family protein -
  CGZ63_RS19650 pnp 3728826..3730964 (-) 2139 WP_000076737.1 polyribonucleotide nucleotidyltransferase -
  CGZ63_RS19655 rpsO 3731125..3731394 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  CGZ63_RS19660 ribF 3731495..3732466 (-) 972 WP_000766706.1 bifunctional riboflavin kinase/FAD synthetase -
  CGZ63_RS19665 truB 3732510..3733433 (-) 924 WP_088343843.1 tRNA pseudouridine(55) synthase TruB -
  CGZ63_RS19670 rbfA 3733520..3733876 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  CGZ63_RS19675 - 3733892..3734173 (-) 282 WP_000582363.1 DUF503 family protein -
  CGZ63_RS19680 infB 3734170..3736230 (-) 2061 WP_089607599.1 translation initiation factor IF-2 -
  CGZ63_RS19685 - 3736235..3736546 (-) 312 WP_001286523.1 YlxQ family RNA-binding protein -
  CGZ63_RS19690 - 3736547..3736819 (-) 273 WP_000071127.1 YlxR family protein -
  CGZ63_RS19695 nusA 3736831..3737937 (-) 1107 WP_000102604.1 transcription termination factor NusA -
  CGZ63_RS19700 rimP 3737955..3738425 (-) 471 WP_000359096.1 ribosome maturation factor RimP -
  CGZ63_RS19705 - 3738762..3743063 (-) 4302 WP_000060005.1 PolC-type DNA polymerase III -
  CGZ63_RS19710 - 3743188..3744888 (-) 1701 WP_088343845.1 proline--tRNA ligase -
  CGZ63_RS19715 rseP 3744998..3746254 (-) 1257 WP_157797751.1 RIP metalloprotease RseP -
  CGZ63_RS19720 dxr 3746272..3747413 (-) 1142 Protein_3710 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CGZ63_RS19725 cdsA 3747437..3748228 (-) 792 WP_000813592.1 phosphatidate cytidylyltransferase -
  CGZ63_RS19730 uppS 3748246..3749022 (-) 777 WP_000971296.1 isoprenyl transferase -
  CGZ63_RS19735 frr 3749108..3749665 (-) 558 WP_000531501.1 ribosome recycling factor -
  CGZ63_RS19740 pyrH 3749668..3750390 (-) 723 WP_000042668.1 UMP kinase -
  CGZ63_RS19745 tsf 3750457..3751344 (-) 888 WP_001018578.1 translation elongation factor Ts -
  CGZ63_RS19750 rpsB 3751448..3752149 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  CGZ63_RS19755 codY 3752497..3753276 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CGZ63_RS19760 hslU 3753354..3754745 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  CGZ63_RS19765 hslV 3754768..3755310 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  CGZ63_RS19770 xerC 3755353..3756252 (-) 900 WP_088343847.1 tyrosine recombinase XerC -
  CGZ63_RS19775 trmFO 3756318..3757622 (-) 1305 WP_000213003.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CGZ63_RS19780 topA 3757671..3759749 (-) 2079 WP_001286963.1 type I DNA topoisomerase -
  CGZ63_RS19785 dprA 3759894..3760763 (-) 870 WP_071741405.1 DNA-processing protein DprA -
  CGZ63_RS19790 sucD 3760852..3761754 (-) 903 WP_088343851.1 succinate--CoA ligase subunit alpha -
  CGZ63_RS19795 sucC 3761774..3762934 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  CGZ63_RS19800 - 3763129..3763902 (-) 774 WP_001194265.1 ribonuclease HII -
  CGZ63_RS19805 ylqF 3763959..3764849 (-) 891 WP_088343853.1 ribosome biogenesis GTPase YlqF -
  CGZ63_RS19810 lepB 3764870..3765421 (-) 552 WP_000711853.1 signal peptidase I -
  CGZ63_RS19815 rplS 3765523..3765867 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  CGZ63_RS19820 trmD 3766014..3766748 (-) 735 WP_000686903.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  CGZ63_RS19825 rimM 3766748..3767263 (-) 516 WP_000170278.1 ribosome maturation factor RimM -
  CGZ63_RS19830 - 3767385..3767612 (-) 228 WP_000737401.1 KH domain-containing protein -
  CGZ63_RS19835 rpsP 3767627..3767899 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  CGZ63_RS19840 ffh 3768001..3769350 (-) 1350 WP_000863460.1 signal recognition particle protein -
  CGZ63_RS19845 - 3769363..3769695 (-) 333 WP_000891062.1 putative DNA-binding protein -
  CGZ63_RS19850 ftsY 3769829..3770818 (-) 990 WP_000007655.1 signal recognition particle-docking protein FtsY -
  CGZ63_RS19855 smc 3770834..3774403 (-) 3570 WP_000478973.1 chromosome segregation protein SMC -
  CGZ63_RS19860 rncS 3774550..3775287 (-) 738 WP_001146875.1 ribonuclease III -
  CGZ63_RS19865 acpP 3775346..3775579 (-) 234 WP_000786062.1 acyl carrier protein -
  CGZ63_RS19870 fabG 3775649..3776389 (-) 741 WP_000911773.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  CGZ63_RS19875 fabD 3776389..3777333 (-) 945 WP_000515899.1 ACP S-malonyltransferase -
  CGZ63_RS19880 plsX 3777348..3778340 (-) 993 WP_000684100.1 phosphate acyltransferase PlsX -
  CGZ63_RS19885 fapR 3778337..3778930 (-) 594 WP_000747348.1 transcription factor FapR -
  CGZ63_RS19890 recG 3779019..3781067 (-) 2049 WP_001000816.1 ATP-dependent DNA helicase RecG -
  CGZ63_RS19895 - 3781358..3783034 (-) 1677 WP_000027129.1 DAK2 domain-containing protein -
  CGZ63_RS19900 - 3783057..3783419 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  CGZ63_RS19905 rpmB 3783796..3783984 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  CGZ63_RS19910 spoVM 3784058..3784138 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  CGZ63_RS19915 - 3784205..3784885 (-) 681 WP_002026234.1 thiamine diphosphokinase -
  CGZ63_RS19920 rpe 3784954..3785598 (-) 645 WP_071741402.1 ribulose-phosphate 3-epimerase -
  CGZ63_RS19925 rsgA 3785601..3786482 (-) 882 WP_001135536.1 ribosome small subunit-dependent GTPase A -
  CGZ63_RS19930 pknB 3786729..3788702 (-) 1974 WP_000904747.1 Stk1 family PASTA domain-containing Ser/Thr kinase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=239560 CGZ63_RS19755 WP_000421290.1 3752497..3753276(-) (codY) [Bacillus cereus C1L]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=239560 CGZ63_RS19755 WP_000421290.1 3752497..3753276(-) (codY) [Bacillus cereus C1L]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment