Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   C7M16_RS05090 Genome accession   NZ_CP028201
Coordinates   1010115..1011032 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain SRCM102753     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1005115..1016032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS05075 (C7M16_00997) trpS 1005696..1006688 (-) 993 WP_160221501.1 tryptophan--tRNA ligase -
  C7M16_RS05080 (C7M16_00998) oppA 1007432..1009069 (+) 1638 WP_048654863.1 oligopeptide ABC transporter substrate-binding protein OppA -
  C7M16_RS05085 (C7M16_00999) oppB 1009176..1010111 (+) 936 WP_048654864.1 oligopeptide ABC transporter permease OppB -
  C7M16_RS05090 (C7M16_01000) amiD 1010115..1011032 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  C7M16_RS05095 (C7M16_01001) oppD 1011037..1012113 (+) 1077 WP_077670618.1 oligopeptide ABC transporter ATP-binding protein OppD -
  C7M16_RS05100 (C7M16_01002) oppF 1012115..1013032 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  C7M16_RS05105 (C7M16_01003) yjbB 1013139..1014356 (+) 1218 WP_080348083.1 MFS transporter -
  C7M16_RS05110 (C7M16_01004) yjbC 1014520..1015098 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  C7M16_RS05115 (C7M16_01005) spx 1015279..1015674 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=239416 C7M16_RS05090 WP_003232954.1 1010115..1011032(+) (amiD) [Bacillus subtilis strain SRCM102753]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=239416 C7M16_RS05090 WP_003232954.1 1010115..1011032(+) (amiD) [Bacillus subtilis strain SRCM102753]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGTATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTTATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTTTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364