Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   CGZ53_RS03560 Genome accession   NZ_CP022435
Coordinates   664778..665656 (+) Length   292 a.a.
NCBI ID   WP_046388607.1    Uniprot ID   -
Organism   Streptococcus uberis strain NZ01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 659778..670656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ53_RS03530 (CGZ53_03530) - 660068..660943 (+) 876 WP_012658189.1 F0F1 ATP synthase subunit gamma -
  CGZ53_RS03535 (CGZ53_03535) atpD 661066..662472 (+) 1407 WP_012658190.1 F0F1 ATP synthase subunit beta -
  CGZ53_RS03540 (CGZ53_03540) - 662486..662902 (+) 417 WP_012658191.1 F0F1 ATP synthase subunit epsilon -
  CGZ53_RS03545 (CGZ53_03545) - 662984..663208 (+) 225 WP_012658192.1 DUF1146 family protein -
  CGZ53_RS03550 (CGZ53_03550) murA 663283..664554 (+) 1272 WP_046388606.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CGZ53_RS03555 (CGZ53_03555) - 664558..664746 (+) 189 WP_012658194.1 DNA-directed RNA polymerase subunit beta -
  CGZ53_RS03560 (CGZ53_03560) endA 664778..665656 (+) 879 WP_046388607.1 DNA/RNA non-specific endonuclease Machinery gene
  CGZ53_RS03565 (CGZ53_03565) pheS 665959..667002 (+) 1044 WP_037592306.1 phenylalanine--tRNA ligase subunit alpha -
  CGZ53_RS03570 (CGZ53_03570) - 667049..667573 (+) 525 WP_046387994.1 GNAT family N-acetyltransferase -
  CGZ53_RS03575 (CGZ53_03575) pheT 667588..669993 (+) 2406 WP_100911975.1 phenylalanine--tRNA ligase subunit beta -
  CGZ53_RS03580 (CGZ53_03580) - 670095..670469 (+) 375 WP_012658199.1 OsmC family protein -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32180.85 Da        Isoelectric Point: 9.8438

>NTDB_id=239382 CGZ53_RS03560 WP_046388607.1 664778..665656(+) (endA) [Streptococcus uberis strain NZ01]
MSNKHPSGKKISAILIALLITGLTALSQGNQSANNPIAHVLQSISGQGNRQSNQKDSQNPDTPSYHLASSVLTNQVKQQL
GNQIEWNGAGAFIINHNKTDLKAKVSSLPYAHNETKMVQGQKVPSRANALLARSTRQYRDRNETGNGYTFWKPVGWHQIH
GLSGEYDHAVDRGHLLGYALVGGLKGFDASTSNPENIAVQMSWANQAYLSDSTGQNYYETLIRKSLDKNKRVRYRVTLIY
EGDNLISSGSHLEAKSDDGSLEFNVFVPNVQKGLKMNYYNGSVEKDAYQKAS

Nucleotide


Download         Length: 879 bp        

>NTDB_id=239382 CGZ53_RS03560 WP_046388607.1 664778..665656(+) (endA) [Streptococcus uberis strain NZ01]
ATGTCAAATAAACACCCAAGTGGCAAAAAAATAAGTGCCATTCTAATAGCTCTGCTCATTACAGGATTAACAGCTCTTTC
TCAGGGCAATCAATCTGCCAATAATCCAATTGCTCATGTTTTGCAGAGCATTTCCGGGCAGGGAAATAGGCAGAGCAATC
AAAAAGATTCTCAAAATCCGGATACTCCCAGTTATCACTTAGCAAGTTCTGTGCTTACAAATCAAGTCAAGCAACAATTA
GGTAATCAGATTGAATGGAATGGCGCCGGAGCTTTTATTATTAATCACAATAAGACAGATTTAAAGGCAAAAGTTTCAAG
TTTACCTTACGCACATAATGAAACGAAAATGGTACAAGGTCAAAAGGTACCAAGTCGAGCTAATGCCTTACTTGCTCGCT
CAACGAGACAGTATAGAGATCGAAACGAAACTGGAAATGGTTATACTTTTTGGAAACCAGTTGGATGGCATCAAATACAT
GGTCTATCAGGGGAATATGACCATGCCGTTGATCGCGGGCACTTATTAGGCTATGCCTTAGTCGGAGGATTAAAAGGTTT
TGATGCTTCAACAAGTAATCCAGAGAACATTGCTGTTCAAATGTCATGGGCTAACCAAGCATATCTGTCCGATTCTACTG
GACAAAATTACTATGAAACCTTAATTCGAAAAAGTTTAGATAAGAATAAGCGGGTTCGCTATCGAGTGACCTTAATTTAT
GAAGGTGACAATCTGATTTCGAGTGGTAGTCATTTGGAAGCAAAGTCGGATGATGGCAGCTTAGAATTCAATGTTTTTGT
ACCAAATGTTCAAAAAGGGTTAAAAATGAATTACTATAATGGTAGCGTTGAAAAAGATGCTTACCAGAAAGCAAGTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(91-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

64.758

77.74

0.503
  endA Streptococcus pneumoniae D39

64.758

77.74

0.503
  endA Streptococcus pneumoniae R6

64.758

77.74

0.503
  endA Streptococcus pneumoniae TIGR4

64.758

77.74

0.503

Multiple sequence alignment