Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   STU_RS10550 Genome accession   NC_006448
Coordinates   185376..186314 (+) Length   312 a.a.
NCBI ID   WP_011225378.1    Uniprot ID   Q5M692
Organism   Streptococcus thermophilus LMG 18311     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 180376..191314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STU_RS10520 (stu0170) - 182039..183053 (+) 1015 Protein_150 peptide ABC transporter substrate-binding protein -
  STU_RS10525 (stu0171) - 183055..183273 (+) 219 Protein_151 ABC transporter permease subunit -
  STU_RS10530 - 183284..184318 (+) 1035 Protein_152 ABC transporter permease -
  STU_RS19065 - 184332..185374 (+) 1043 Protein_153 ABC transporter ATP-binding protein -
  STU_RS10550 (stu0178) amiF 185376..186314 (+) 939 WP_011225378.1 ABC transporter ATP-binding protein Regulator
  STU_RS20355 (stu0179) - 186536..186724 (+) 189 WP_011225379.1 hypothetical protein -
  STU_RS10560 (stu0180) hslO 186871..187737 (+) 867 WP_041828113.1 Hsp33 family molecular chaperone HslO -
  STU_RS10565 (stu0181) dusB 187730..188707 (+) 978 WP_041828115.1 tRNA dihydrouridine synthase DusB -
  STU_RS10570 (stu0182) - 189057..189773 (+) 717 WP_011225382.1 MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35309.84 Da        Isoelectric Point: 6.0186

>NTDB_id=23906 STU_RS10550 WP_011225378.1 185376..186314(+) (amiF) [Streptococcus thermophilus LMG 18311]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSSTVTFSGNEISSL
KGKDLHDFRKTDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKHQHLIYDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=23906 STU_RS10550 WP_011225378.1 185376..186314(+) (amiF) [Streptococcus thermophilus LMG 18311]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACTTTCTGATATTGATTCGAGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGAATTGGTATTGCACGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCATCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)

ABC transporter (ABC_tran)

(30-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M692

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.115

97.756

0.519
  amiF Streptococcus thermophilus LMG 18311

52.787

97.756

0.516
  amiF Streptococcus salivarius strain HSISS4

52.459

97.756

0.513

Multiple sequence alignment