Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LL14B4_RS12275 Genome accession   NZ_CP028160
Coordinates   2471171..2471764 (-) Length   197 a.a.
NCBI ID   WP_003131995.1    Uniprot ID   Q9CDL2
Organism   Lactococcus lactis subsp. lactis strain 14B4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2466171..2476764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL14B4_RS13475 - 2466378..2466542 (-) 165 WP_003131988.1 hypothetical protein -
  LL14B4_RS12250 (LL14B4_12240) - 2466647..2467264 (-) 618 WP_012898695.1 AAA family ATPase -
  LL14B4_RS12255 (LL14B4_12245) - 2467261..2468445 (-) 1185 WP_014570851.1 ABC transporter permease -
  LL14B4_RS12260 (LL14B4_12250) - 2468512..2468796 (-) 285 WP_233610988.1 hypothetical protein -
  LL14B4_RS12265 (LL14B4_12255) - 2469022..2469906 (-) 885 WP_058203823.1 XRE/MutR family transcriptional regulator -
  LL14B4_RS12270 (LL14B4_12260) ruvB 2470043..2471044 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LL14B4_RS12275 (LL14B4_12265) ruvA 2471171..2471764 (-) 594 WP_003131995.1 Holliday junction branch migration protein RuvA Machinery gene
  LL14B4_RS12280 (LL14B4_12270) hexB 2471874..2473844 (-) 1971 WP_162551488.1 DNA mismatch repair endonuclease MutL Machinery gene
  LL14B4_RS12285 (LL14B4_12275) - 2473973..2474668 (-) 696 WP_012898700.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21166.73 Da        Isoelectric Point: 5.8174

>NTDB_id=238655 LL14B4_RS12275 WP_003131995.1 2471171..2471764(-) (ruvA) [Lactococcus lactis subsp. lactis strain 14B4]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=238655 LL14B4_RS12275 WP_003131995.1 2471171..2471764(-) (ruvA) [Lactococcus lactis subsp. lactis strain 14B4]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGCTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCGGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCGCACAGTCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGTGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACTAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CDL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462

Multiple sequence alignment