Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CEQ48_RS20545 Genome accession   NZ_CP022353
Coordinates   3007791..3008651 (-) Length   286 a.a.
NCBI ID   WP_089072402.1    Uniprot ID   -
Organism   Vibrio tarriae strain 2521-89     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3002791..3013651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEQ48_RS19700 (CEQ48_19700) gspL 3003045..3004256 (+) 1212 WP_182910824.1 type II secretion system protein GspL -
  CEQ48_RS19705 (CEQ48_19705) - 3004266..3004763 (+) 498 WP_198301311.1 type II secretion system protein M -
  CEQ48_RS19710 (CEQ48_19710) - 3004765..3005523 (+) 759 WP_089072347.1 type II secretion system protein N -
  CEQ48_RS19715 (CEQ48_19715) cysQ 3005575..3006402 (-) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CEQ48_RS19720 (CEQ48_19720) nudE 3006425..3006973 (-) 549 WP_089072348.1 ADP compounds hydrolase NudE -
  CEQ48_RS19725 (CEQ48_19725) nfuA 3007116..3007703 (-) 588 WP_089072349.1 Fe-S biogenesis protein NfuA -
  CEQ48_RS20545 (CEQ48_19730) comF 3007791..3008651 (-) 861 WP_089072402.1 ComF family protein Machinery gene
  CEQ48_RS19735 (CEQ48_19735) bioH 3008587..3009348 (+) 762 WP_181713439.1 pimeloyl-ACP methyl ester esterase BioH -
  CEQ48_RS19740 (CEQ48_19740) - 3009510..3009980 (+) 471 WP_185835476.1 ATP-dependent Lon protease -
  CEQ48_RS19745 (CEQ48_19745) - 3010075..3012396 (-) 2322 WP_089072352.1 Tex family protein -
  CEQ48_RS19750 (CEQ48_19750) greB 3012639..3013121 (+) 483 WP_000850497.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32589.54 Da        Isoelectric Point: 7.9437

>NTDB_id=238655 CEQ48_RS20545 WP_089072402.1 3007791..3008651(-) (comF) [Vibrio tarriae strain 2521-89]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYLDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLSQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLTTQ
INEPAPLLCSVPLHWRRRWLRGFNQSDLLARELADVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=238655 CEQ48_RS20545 WP_089072402.1 3007791..3008651(-) (comF) [Vibrio tarriae strain 2521-89]
ATGCCCCAGCCATGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCTTGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACTGCACCGCTGCTCACCCCGGAATGTCATCTCTGCCGACTGGCACTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGCTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGACCAGTGCGGGCAGTGTTTGAGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTGCTCACCACCCAG
ATTAATGAGCCAGCCCCGTTACTGTGCAGTGTACCGCTGCATTGGAGGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAATTAGCCGATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGTCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGCATACACAACCTACGCGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGTGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

97.552

100

0.976
  comF Vibrio campbellii strain DS40M4

46.218

83.217

0.385

Multiple sequence alignment