Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LL14B4_RS01170 Genome accession   NZ_CP028160
Coordinates   233713..235590 (+) Length   625 a.a.
NCBI ID   WP_033900385.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain 14B4     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 228713..240590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL14B4_RS01150 (LL14B4_01150) - 228917..230180 (-) 1264 Protein_216 NAD(P)/FAD-dependent oxidoreductase -
  LL14B4_RS01155 (LL14B4_01155) - 230321..231148 (+) 828 WP_109990597.1 NAD(P)H-hydrate dehydratase -
  LL14B4_RS01160 (LL14B4_01160) - 231297..231710 (+) 414 WP_003131176.1 DUF1398 domain-containing protein -
  LL14B4_RS01165 (LL14B4_01165) - 231881..233716 (+) 1836 WP_109990598.1 ABC transporter ATP-binding protein -
  LL14B4_RS01170 (LL14B4_01170) rcrQ 233713..235590 (+) 1878 WP_033900385.1 ABC transporter ATP-binding protein Regulator
  LL14B4_RS01175 (LL14B4_01175) - 235687..236340 (+) 654 WP_010905251.1 YcjF family protein -
  LL14B4_RS01180 (LL14B4_01180) - 236386..237405 (-) 1020 WP_017864067.1 Gfo/Idh/MocA family oxidoreductase -
  LL14B4_RS13390 - 237389..237556 (-) 168 WP_003131184.1 hypothetical protein -
  LL14B4_RS01185 (LL14B4_01185) - 237744..238220 (-) 477 WP_003131187.1 S-ribosylhomocysteine lyase -
  LL14B4_RS01190 (LL14B4_01190) - 238434..238898 (+) 465 WP_109990599.1 GyrI-like domain-containing protein -
  LL14B4_RS01195 (LL14B4_01195) - 238963..239808 (+) 846 WP_003131189.1 aldo/keto reductase -
  LL14B4_RS01200 (LL14B4_01200) - 239974..240486 (+) 513 WP_023189990.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70285.14 Da        Isoelectric Point: 8.7506

>NTDB_id=238574 LL14B4_RS01170 WP_033900385.1 233713..235590(+) (rcrQ) [Lactococcus lactis subsp. lactis strain 14B4]
MMRGNYLNRGGKGADRFQKGRRAQNFFPTIIRLFKYMRRDLWGLLFSILIASLSVILSVQAPKILGNATTVIFDGVTKSL
KNHTAIQIDMTKVESILLYVMVIYLISFISGILQQSIMTRISQRTVYTLRREFKNKMKKLPVSYYDSHSNGDIMSRMIND
MDNISGTLNQTLIQLITSLLQFVGTIYFMLTISWQLALVAFITVPLAMITVRIVAPLSQKFFAEQQKNLGLLNDQIEENY
AGHAVIKTFNHEASAEKEFAKRNDNFYKSAWKAQFVSTLIYPTMRFINNLDYLAMAVIGGLKVISGTVNLGDVQAMLQYT
NQFAQPITNISNMLNTIQATVASAERIFEVLDEKEMTDGIPVSEKVADESSKKAVSNLGATDKTDFINFDQVAFSYNENQ
SLMTDVNFSVEVGQMIAIVGPTGAGKTTMINLLERFYDVTSGKILLEGKDIREIDREQLRGRMAMVLQETWLFSGTIMDN
LQYGRLEATQEEVIQAAKMAHADEFITTLPQGYQTLLNEAASNISQGQRQLLTIARAFLANPEILILDEATSSVDTRTER
LIQSAMNRLLKGRTSFVVAHRLSTIRDANQILVMENGNIVEMGNHESLLKENGLYASLYNSQFAK

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=238574 LL14B4_RS01170 WP_033900385.1 233713..235590(+) (rcrQ) [Lactococcus lactis subsp. lactis strain 14B4]
ATGATGAGAGGAAATTATCTCAATCGAGGTGGCAAAGGGGCTGACCGTTTTCAAAAAGGTCGGCGAGCTCAAAATTTCTT
TCCAACGATTATTCGACTTTTCAAATATATGCGCAGAGATTTATGGGGACTTCTTTTTTCAATTTTAATTGCTTCGCTGT
CAGTCATTTTGTCGGTTCAGGCACCCAAAATTTTGGGAAATGCAACCACAGTGATATTTGATGGCGTAACAAAAAGTCTA
AAAAATCATACCGCAATTCAAATTGACATGACTAAGGTCGAATCTATTTTGCTTTATGTCATGGTCATTTATCTGATTTC
ATTTATCTCTGGGATTTTGCAACAAAGCATTATGACACGCATTTCGCAACGAACAGTTTATACTTTACGTCGTGAATTTA
AAAACAAAATGAAAAAATTGCCAGTTTCATATTATGATAGTCATAGTAATGGGGATATCATGAGTCGAATGATAAATGAT
ATGGATAATATTTCAGGGACTTTAAATCAAACTTTGATTCAGCTTATCACAAGTCTCTTGCAATTTGTTGGAACTATTTA
TTTCATGTTGACCATCTCTTGGCAGTTGGCACTCGTCGCCTTTATCACAGTTCCTTTGGCAATGATTACGGTAAGGATTG
TTGCACCTTTATCGCAAAAATTCTTTGCTGAACAACAAAAAAATCTGGGATTATTGAATGACCAAATTGAAGAAAATTAT
GCAGGACATGCGGTCATTAAAACATTCAATCATGAAGCCTCAGCTGAAAAAGAATTCGCAAAAAGAAATGATAATTTTTA
TAAATCAGCTTGGAAAGCTCAATTTGTATCGACTTTGATTTATCCAACCATGCGATTTATCAATAATTTAGATTACTTAG
CCATGGCCGTAATTGGTGGTCTTAAAGTTATTTCAGGGACGGTTAATCTCGGAGATGTTCAAGCCATGTTGCAATATACC
AATCAATTTGCACAGCCAATCACAAATATCTCGAATATGCTCAATACCATTCAGGCTACAGTTGCGTCAGCCGAACGAAT
TTTTGAAGTATTAGATGAAAAAGAAATGACTGACGGAATTCCTGTCAGTGAAAAAGTTGCTGACGAAAGTTCAAAAAAAG
CTGTCAGTAATTTAGGAGCGACTGACAAGACTGATTTCATCAATTTTGACCAAGTCGCATTTTCTTATAATGAAAATCAA
TCCTTAATGACAGATGTTAATTTTTCCGTTGAAGTTGGGCAAATGATTGCCATTGTGGGACCAACTGGAGCAGGTAAAAC
AACAATGATTAACTTGCTCGAACGATTTTACGATGTCACTTCGGGAAAAATTTTACTTGAAGGAAAAGACATTCGCGAAA
TTGACCGTGAACAATTACGTGGACGAATGGCAATGGTTTTACAAGAAACCTGGTTGTTCTCAGGGACAATTATGGATAAT
TTACAGTATGGTCGTCTTGAAGCAACACAAGAAGAAGTGATTCAAGCAGCTAAAATGGCACATGCTGATGAATTTATCAC
CACTTTACCTCAAGGTTATCAAACCCTTTTGAATGAAGCCGCAAGCAATATTTCTCAGGGGCAAAGGCAGTTATTAACCA
TCGCCCGTGCCTTTTTAGCAAATCCAGAAATATTGATTTTGGATGAAGCCACATCCAGTGTAGATACAAGAACGGAGCGC
CTGATTCAATCAGCGATGAATCGTCTATTAAAAGGACGGACAAGCTTTGTCGTTGCTCACCGTTTATCAACTATTCGTGA
TGCCAATCAGATTTTGGTTATGGAAAATGGAAATATTGTGGAAATGGGGAACCATGAAAGTCTCCTTAAAGAAAACGGAT
TATATGCCAGCCTTTATAATTCGCAATTTGCAAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(404-552)

ABC transporter transmembrane region (ABC_membrane)

(44-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.809

94.88

0.387

Multiple sequence alignment