Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CAV_RS05845 Genome accession   NZ_CP022347
Coordinates   1144785..1145741 (+) Length   318 a.a.
NCBI ID   WP_094325592.1    Uniprot ID   A0A222MXT0
Organism   Campylobacter avium LMG 24591     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1139785..1150741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAV_RS05825 (CAV_1156) - 1140227..1141114 (-) 888 WP_094325589.1 polyprenyl synthetase family protein -
  CAV_RS05830 (CAV_1157) - 1141125..1141577 (-) 453 WP_094325590.1 exporting protein -
  CAV_RS05835 (CAV_1158) - 1141574..1141834 (-) 261 WP_094325591.1 DUF2018 family protein -
  CAV_RS05840 (CAV_1159) - 1142182..1144626 (+) 2445 WP_245807438.1 DNA translocase FtsK -
  CAV_RS05845 (CAV_1160) ceuB 1144785..1145741 (+) 957 WP_094325592.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  CAV_RS05850 (CAV_1161) - 1145734..1146672 (+) 939 WP_094325593.1 iron chelate uptake ABC transporter family permease subunit -
  CAV_RS05855 (CAV_1162) - 1146669..1147427 (+) 759 WP_094325594.1 ATP-binding cassette domain-containing protein -
  CAV_RS05860 (CAV_1163) - 1147443..1148489 (+) 1047 WP_094325595.1 siderophore ABC transporter substrate-binding protein -
  CAV_RS05865 (CAV_1164) - 1148692..1149000 (+) 309 WP_094325596.1 hypothetical protein -
  CAV_RS05870 (CAV_1165) - 1149001..1149288 (+) 288 WP_094325597.1 hypothetical protein -
  CAV_RS08900 - 1149538..1149738 (-) 201 WP_169711637.1 hypothetical protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35223.60 Da        Isoelectric Point: 8.7662

>NTDB_id=238574 CAV_RS05845 WP_094325592.1 1144785..1145741(+) (ceuB) [Campylobacter avium LMG 24591]
MRFLFSLWFLLPLTIILAFTSLFVGVTDISLFGLLKGLHEDVFIISRIPRTITIIISGASLSICGLIMQQLTQNKFVSPT
TAGTMDCAKFGILISIIFFSTHSFISQVLVSSFFALLGSLIFIQILNNIKLKDVIFIPLIGLMFGGIINSITTFFAYQLN
LIQNMQIWLQGNFSNIMQGSYELIYISLPLLLLAYLYANKITIAGMGEEMAVNLGLSYKFILNLGLIIVSIITAIIILTV
GVIPFLGLIVPNIISIYRGDNIRANILNIALLGSCFLLLCDIFSRLIIYPFEIPIGLTVGVIGSFIFISLLLRNKHYA

Nucleotide


Download         Length: 957 bp        

>NTDB_id=238574 CAV_RS05845 WP_094325592.1 1144785..1145741(+) (ceuB) [Campylobacter avium LMG 24591]
TTGCGTTTTTTGTTTTCGTTGTGGTTTTTACTACCCTTAACTATCATCTTAGCCTTTACAAGCTTGTTTGTTGGAGTAAC
CGATATATCTTTGTTTGGGCTTTTAAAAGGATTGCACGAGGATGTTTTCATCATCTCAAGGATACCAAGAACCATAACCA
TAATTATAAGCGGTGCTAGCCTTAGCATTTGCGGGCTTATAATGCAGCAATTAACGCAAAATAAATTCGTCTCTCCAACC
ACAGCAGGCACTATGGACTGTGCGAAATTTGGCATACTGATATCCATTATATTTTTTAGCACTCATTCTTTTATATCTCA
AGTCTTAGTCTCGTCCTTTTTTGCCCTGCTTGGAAGCTTGATTTTTATACAAATTCTAAACAACATAAAGCTAAAAGATG
TGATTTTTATACCCTTAATAGGACTTATGTTTGGCGGTATAATAAATTCCATAACAACCTTTTTTGCTTATCAATTAAAC
CTTATACAAAACATGCAAATTTGGCTTCAAGGAAATTTCTCAAACATTATGCAAGGCTCTTATGAGCTTATTTACATATC
CTTACCCTTGCTTTTGCTTGCGTATTTGTATGCAAATAAAATCACCATAGCAGGTATGGGCGAGGAAATGGCGGTAAATT
TGGGACTTTCTTACAAATTTATACTAAATTTAGGACTTATAATCGTATCTATCATAACAGCCATTATTATTTTAACCGTT
GGCGTGATACCATTTTTAGGGCTCATTGTGCCTAATATAATATCAATTTACAGAGGGGATAATATCAGGGCAAATATCCT
AAACATAGCTCTTTTAGGCTCTTGCTTTTTGCTACTTTGCGATATTTTTTCAAGGCTTATAATCTATCCTTTTGAAATTC
CAATAGGCCTAACCGTTGGCGTCATAGGCTCTTTTATCTTTATAAGTCTTTTGCTTAGGAACAAGCACTATGCTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(13-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A222MXT0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

63.009

100

0.632

Multiple sequence alignment