Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CFN60_RS08290 Genome accession   NZ_CP022341
Coordinates   1628122..1628901 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain 157     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1623122..1633901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN60_RS08270 (CFN60_08270) trmFO 1623809..1625116 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CFN60_RS08275 (CFN60_08275) xerC 1625186..1626103 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  CFN60_RS08280 (CFN60_08280) hslV 1626119..1626664 (+) 546 WP_022553348.1 ATP-dependent protease subunit HslV -
  CFN60_RS08285 (CFN60_08285) hslU 1626681..1628084 (+) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  CFN60_RS08290 (CFN60_08290) codY 1628122..1628901 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CFN60_RS08295 (CFN60_08295) flgB 1629255..1629644 (+) 390 WP_089072433.1 flagellar basal body rod protein FlgB -
  CFN60_RS08300 (CFN60_08300) flgC 1629644..1630096 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  CFN60_RS08305 (CFN60_08305) fliE 1630107..1630427 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  CFN60_RS08310 (CFN60_08310) fliF 1630470..1632080 (+) 1611 WP_022553346.1 flagellar basal-body MS-ring/collar protein FliF -
  CFN60_RS08315 (CFN60_08315) fliG 1632093..1633109 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  CFN60_RS08320 (CFN60_08320) fliH 1633102..1633857 (+) 756 WP_022553345.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=238446 CFN60_RS08290 WP_003154263.1 1628122..1628901(+) (codY) [Bacillus velezensis strain 157]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=238446 CFN60_RS08290 WP_003154263.1 1628122..1628901(+) (codY) [Bacillus velezensis strain 157]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACA
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment