Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   CFN77_RS08170 Genome accession   NZ_CP022319
Coordinates   1602106..1602885 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain SGAir0031     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1597106..1607885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFN77_RS08150 (CFN77_08240) trmFO 1597810..1599114 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  CFN77_RS08155 (CFN77_08245) xerC 1599177..1600094 (+) 918 WP_039166693.1 tyrosine recombinase XerC -
  CFN77_RS08160 (CFN77_08250) hslV 1600109..1600654 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  CFN77_RS08165 (CFN77_08255) hslU 1600671..1602071 (+) 1401 WP_096881393.1 HslU--HslV peptidase ATPase subunit -
  CFN77_RS08170 (CFN77_08260) codY 1602106..1602885 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  CFN77_RS08175 (CFN77_08265) flgB 1603176..1603565 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  CFN77_RS08180 (CFN77_08270) flgC 1603565..1604017 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  CFN77_RS08185 (CFN77_08275) fliE 1604029..1604346 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  CFN77_RS08190 (CFN77_08280) fliF 1604397..1605989 (+) 1593 WP_024720350.1 flagellar basal-body MS-ring/collar protein FliF -
  CFN77_RS08195 (CFN77_08285) fliG 1606001..1607017 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  CFN77_RS08200 (CFN77_08290) fliH 1607010..1607774 (+) 765 WP_024720351.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=238310 CFN77_RS08170 WP_007499612.1 1602106..1602885(+) (codY) [Bacillus altitudinis strain SGAir0031]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=238310 CFN77_RS08170 WP_007499612.1 1602106..1602885(+) (codY) [Bacillus altitudinis strain SGAir0031]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTTAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCAATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment