Detailed information NTG0237987

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I3W_RS17505
• Genome accession: NZ_CP028122
• Coordinates: 3118267..3119259 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O43 str. RM10042
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3113267..3124259

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I3W_RS17480 (I3W_17475)	ygbN	3113921..3115285 (+)	1365	WP_000104439.1	GntP family transporter	-
I3W_RS17485 (I3W_17480)	-	3115325..3115561 (-)	237	WP_000562991.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
I3W_RS17490 (I3W_17485)	-	3115572..3116999 (-)	1428	WP_000863194.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
I3W_RS17495 (I3W_17490)	-	3116999..3117592 (-)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
I3W_RS17500 (I3W_17495)	-	3117739..3118146 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
I3W_RS17505 (I3W_17500)	rpoS	3118267..3119259 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
I3W_RS17510 (I3W_17505)	nlpD	3119322..3120416 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
I3W_RS17515 (I3W_17510)	pcm	3120601..3121227 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
I3W_RS17520 (I3W_17515)	surE	3121221..3121982 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
I3W_RS17525 (I3W_17520)	truD	3121963..3123012 (-)	1050	WP_108942459.1	tRNA pseudouridine(13) synthase TruD	-
I3W_RS17530 (I3W_17525)	ispF	3123009..3123488 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I3W_RS17535 (I3W_17530)	ispD	3123488..3124198 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=237987 I3W_RS17505 WP_000081550.1 3118267..3119259(-) (rpoS) [Escherichia coli O43 str. RM10042]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=237987 I3W_RS17505 WP_000081550.1 3118267..3119259(-) (rpoS) [Escherichia coli O43 str. RM10042]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715