Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CEY12_RS10395 Genome accession   NZ_CP022282
Coordinates   2287242..2287895 (+) Length   217 a.a.
NCBI ID   WP_089027627.1    Uniprot ID   A0A220SAH4
Organism   Chryseobacterium sp. T16E-39     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2282242..2292895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEY12_RS10385 (CEY12_10385) aceB 2283970..2285544 (-) 1575 WP_089027625.1 malate synthase A -
  CEY12_RS10390 (CEY12_10390) - 2285671..2287155 (+) 1485 WP_089027626.1 helix-turn-helix domain-containing protein -
  CEY12_RS10395 (CEY12_10395) comF 2287242..2287895 (+) 654 WP_089027627.1 ComF family protein Machinery gene
  CEY12_RS10400 (CEY12_10400) - 2288130..2288813 (+) 684 WP_089027628.1 alpha/beta fold hydrolase -
  CEY12_RS10405 (CEY12_10405) upp 2288821..2289471 (-) 651 WP_089027629.1 uracil phosphoribosyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25741.75 Da        Isoelectric Point: 8.0751

>NTDB_id=237897 CEY12_RS10395 WP_089027627.1 2287242..2287895(+) (comF) [Chryseobacterium sp. T16E-39]
MILDLLFPNRCIHCNRIIDADLLVCEICFEHIHFTHYDYFNENIIKEKCKLLFPVENTYALMRFEEKSLSRKIIHELKYR
NREKTGKILADWTTENLNFYDQKPDLLVSVPLHPKKQKERGYNQLHLFTETLSEYYRIPFDHDLIKRNHYSKAQALKDKK
HRLKNDNIFSITRNISGKHILLIDDVFTTGNTVATIAWEILNVGDNKVSVLVMAVDY

Nucleotide


Download         Length: 654 bp        

>NTDB_id=237897 CEY12_RS10395 WP_089027627.1 2287242..2287895(+) (comF) [Chryseobacterium sp. T16E-39]
ATGATTCTCGACCTTCTTTTTCCCAACCGTTGCATCCACTGCAACCGGATTATCGATGCCGACCTATTGGTGTGTGAGAT
CTGCTTTGAACACATTCATTTCACTCATTACGACTATTTTAATGAAAATATTATTAAAGAAAAATGCAAATTGTTATTCC
CGGTAGAAAACACCTATGCTCTGATGCGGTTCGAAGAAAAAAGTTTAAGCCGAAAAATCATCCATGAGCTGAAATACAGA
AATCGTGAAAAGACCGGGAAAATTCTGGCAGATTGGACAACCGAAAATCTGAATTTTTATGATCAAAAACCAGACCTGTT
AGTAAGCGTACCGCTTCATCCCAAGAAACAAAAAGAAAGAGGCTACAATCAGTTACATCTCTTTACGGAAACGCTGTCTG
AATATTACAGAATTCCATTTGATCATGACTTAATTAAAAGAAATCATTATTCAAAAGCCCAGGCATTAAAGGACAAAAAA
CATCGTTTAAAAAATGACAATATATTTTCAATAACCCGGAATATTTCAGGAAAGCATATTCTTCTGATCGATGATGTCTT
CACTACCGGAAACACCGTCGCTACCATTGCATGGGAAATCTTAAATGTGGGAGACAATAAAGTGAGTGTTTTGGTGATGG
CTGTAGATTATTAG

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220SAH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

54.63

99.539

0.544

Multiple sequence alignment