Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACIAD_RS16265 Genome accession   NC_005966
Coordinates   3513635..3514906 (-) Length   423 a.a.
NCBI ID   WP_004923137.1    Uniprot ID   Q6F6T3
Organism   Acinetobacter baylyi ADP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3508635..3519906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIAD_RS16250 (ACIAD3592) - 3509193..3509924 (+) 732 WP_004923143.1 amino acid ABC transporter ATP-binding protein -
  ACIAD_RS16255 (ACIAD3593) - 3510154..3511008 (+) 855 WP_004923141.1 formate/nitrite transporter family protein -
  ACIAD_RS16260 (ACIAD3594) - 3511012..3513042 (-) 2031 WP_004923139.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  ACIAD_RS16265 (ACIAD3596) rarA 3513635..3514906 (-) 1272 WP_004923137.1 replication-associated recombination protein A Machinery gene
  ACIAD_RS16270 (ACIAD3597) - 3514986..3516179 (-) 1194 WP_004923134.1 ADC-like class C beta-lactamase ADC-8 -
  ACIAD_RS16275 (ACIAD3598) - 3516197..3517369 (-) 1173 WP_004923131.1 PQQ-dependent sugar dehydrogenase -
  ACIAD_RS16280 (ACIAD3599) - 3517500..3517907 (-) 408 WP_004923128.1 Cd(II)/Pb(II)-responsive transcriptional regulator -
  ACIAD_RS16285 (ACIAD3600) - 3517973..3518611 (+) 639 WP_004923126.1 cation transporter -
  ACIAD_RS16290 (ACIAD3601) - 3518608..3519060 (-) 453 WP_004923123.1 YcgN family cysteine cluster protein -
  ACIAD_RS16895 (ACIAD3602) - 3519248..3519406 (+) 159 WP_004679179.1 DUF1328 domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 47246.93 Da        Isoelectric Point: 6.0943

>NTDB_id=23741 ACIAD_RS16265 WP_004923137.1 3513635..3514906(-) (rarA) [Acinetobacter baylyi ADP1]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAVDRPFVSLSALNTGV
KELREIIAESGDLLTPVVFIDEIHRFNKSQQDALLNAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNVLDSAAIQN
LIDRAIDSDSFLKQRHIHIEEYEALIQFAAGDARKALNLIDLIASTFEPDQENIVTNAVTVKVAQQNIARYDKSGEQHYD
IISAFIKSIRGSDPDAALYWMARMIKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQCA
VYLATSPKSNSTYLAIDRALALAEKTANLPVPLHLRNAPTKLMKQQGYGADYLYPHHYPEHFVLQEYLPPELKGTKLYEF
SRNKREVEGERLQQRRWQQDQQQ

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=23741 ACIAD_RS16265 WP_004923137.1 3513635..3514906(-) (rarA) [Acinetobacter baylyi ADP1]
ATGTCAGATACTCATATTCCACTTCCCGAACGTTTACGTCCACGAGATTTATCGGAAATTATTGGACAAGATCATTTGCT
TGGAGAGCATGCGCCATTACGTCAAATGATCGATCAGGGGCATTTACCCTCAATTATTTTTTGGGGGCCACCTGGGGTTG
GAAAAACGACCATTGCGCTTTTATTGGCACAAGCGGTAGATCGTCCTTTTGTCAGCTTATCTGCACTAAATACCGGGGTA
AAAGAACTACGGGAAATCATTGCAGAAAGTGGTGATTTACTGACGCCTGTGGTATTCATTGACGAGATTCATCGTTTTAA
CAAATCTCAGCAAGATGCACTTTTGAATGCGGTTGAGAAGGGAAAAATCACCCTGATTGGTGCGACGACTGAAAATCCAT
CTTTTGAAGTGAATAGTGCCTTATTGTCACGTTGTCAGGTCTACACCTTAAATGTATTGGATTCGGCTGCGATTCAAAAT
TTAATTGATAGAGCTATCGACTCAGATTCATTTTTAAAACAGCGTCATATTCATATCGAGGAATATGAGGCACTGATCCA
GTTTGCAGCGGGGGATGCGCGTAAGGCCCTGAATCTGATTGACCTGATTGCCAGTACCTTTGAGCCAGATCAAGAAAACA
TCGTCACCAATGCGGTAACAGTCAAGGTGGCACAACAAAATATTGCCCGCTATGACAAATCTGGCGAGCAGCATTACGAT
ATTATTTCGGCATTCATTAAATCGATACGTGGTAGTGATCCTGATGCCGCCTTGTACTGGATGGCACGTATGATCAAAGG
TGGAGAAGATCCTGTATTTATTGCAAGGCGTATGCTGATTGCAGCATCTGAAGATATTGGTAATTCGAATCCGAATGCGC
TGTTGTTGGCTGGTGAATGTTTTCGCTCGGTTCAGGCGGTGGGTATGCCTGAAGCGAGAATTATTCTGGGGCAGTGTGCG
GTTTATCTGGCCACCAGCCCCAAAAGTAACAGTACTTATTTAGCGATTGATCGCGCATTGGCGTTGGCTGAGAAAACAGC
CAATTTGCCAGTGCCGTTGCATTTACGCAATGCACCCACCAAGTTGATGAAACAGCAAGGTTATGGCGCAGATTATCTAT
ATCCCCATCATTATCCTGAGCATTTTGTACTTCAAGAGTATCTGCCACCAGAGCTTAAAGGCACCAAGCTGTATGAATTT
TCACGTAATAAACGTGAAGTTGAAGGGGAGCGATTACAACAAAGACGCTGGCAACAAGATCAGCAGCAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(178-250)

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6F6T3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

41.5

94.563

0.392