Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   C7M53_RS08705 Genome accession   NZ_CP027789
Coordinates   1664690..1665139 (+) Length   149 a.a.
NCBI ID   WP_119953746.1    Uniprot ID   -
Organism   Bacillus licheniformis strain TAB7     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1659690..1670139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M53_RS08670 (C7M53_08655) ctaF 1660133..1660462 (+) 330 WP_003181487.1 cytochrome c oxidase subunit IVB -
  C7M53_RS08675 (C7M53_08660) ctaG 1660496..1661395 (+) 900 WP_026080860.1 cytochrome c oxidase assembly factor CtaG -
  C7M53_RS08680 (C7M53_08665) - 1661452..1661811 (-) 360 WP_003181492.1 YugN family protein -
  C7M53_RS08685 (C7M53_08670) - 1661979..1662425 (+) 447 WP_003181494.1 CBS domain-containing protein -
  C7M53_RS08690 (C7M53_08675) - 1662566..1663609 (+) 1044 WP_003181497.1 CAP domain-containing protein -
  C7M53_RS08695 (C7M53_08680) - 1663763..1664158 (+) 396 WP_003181499.1 YlbD family protein -
  C7M53_RS08700 (C7M53_08685) - 1664173..1664412 (+) 240 WP_003181501.1 YlbE-like family protein -
  C7M53_RS08705 (C7M53_08690) ylbF 1664690..1665139 (+) 450 WP_119953746.1 YlbF family regulator Regulator
  C7M53_RS08710 (C7M53_08695) - 1665211..1665483 (+) 273 WP_009328559.1 YlbG family protein -
  C7M53_RS24070 (C7M53_0065) - 1665593..1665727 (+) 135 WP_254926361.1 hypothetical protein -
  C7M53_RS08715 (C7M53_08700) rsmD 1665776..1666342 (+) 567 WP_003181507.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  C7M53_RS08720 (C7M53_08705) coaD 1666335..1666829 (+) 495 WP_003181508.1 pantetheine-phosphate adenylyltransferase -
  C7M53_RS08725 (C7M53_08710) ylbJ 1666838..1668058 (-) 1221 WP_003181511.1 sporulation integral membrane protein YlbJ -
  C7M53_RS08730 (C7M53_08715) - 1668382..1669404 (+) 1023 WP_009328558.1 SepM family pheromone-processing serine protease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16963.21 Da        Isoelectric Point: 6.3347

>NTDB_id=237379 C7M53_RS08705 WP_119953746.1 1664690..1665139(+) (ylbF) [Bacillus licheniformis strain TAB7]
MFATMESLRLQNEAYDLANMILQSEAAEHYRKCYKRLREDEEAGRIIASFTKIKEQYEDVQRFGKYHPDYKEISKKMREI
KRELDLHDTVAEFKKAETELQSILDEVSVEIGHAVSKHIKVPTGNPYFDNLSFCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=237379 C7M53_RS08705 WP_119953746.1 1664690..1665139(+) (ylbF) [Bacillus licheniformis strain TAB7]
ATGTTTGCCACAATGGAATCGTTGCGGCTTCAAAATGAAGCATATGATTTGGCCAACATGATTCTTCAATCAGAGGCGGC
TGAACATTACAGAAAATGCTACAAGCGTCTCCGCGAAGATGAAGAGGCCGGACGTATTATCGCTTCGTTTACGAAAATAA
AAGAACAGTACGAGGATGTGCAGCGCTTTGGCAAGTATCATCCTGATTATAAAGAGATATCCAAGAAAATGAGGGAAATC
AAACGGGAGCTTGACCTTCACGATACAGTAGCCGAATTTAAAAAGGCGGAAACCGAGCTGCAATCCATTCTTGATGAAGT
CAGCGTGGAAATCGGTCATGCTGTGTCAAAACATATCAAAGTACCGACTGGAAACCCTTATTTTGATAATCTTTCATTTT
GCGGCGGCGGCTGCGGGTCAGGCGGAAGCTGCGGCTGTAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

83.893

100

0.839