Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   TT_RS07680 Genome accession   NC_005835
Coordinates   1444538..1445803 (+) Length   421 a.a.
NCBI ID   WP_011173897.1    Uniprot ID   Q72HG4
Organism   Thermus thermophilus HB27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1439538..1450803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TT_RS07655 (TT_C1517) folE 1440780..1441403 (-) 624 WP_011173891.1 GTP cyclohydrolase I FolE -
  TT_RS07660 (TT_C1518) - 1441442..1442134 (-) 693 WP_011173892.1 gamma carbonic anhydrase family protein -
  TT_RS07665 (TT_C1519) - 1442115..1442495 (-) 381 WP_011173893.1 NUDIX hydrolase -
  TT_RS07670 (TT_C1520) - 1442486..1443349 (-) 864 WP_011173894.1 DUF1028 domain-containing protein -
  TT_RS11775 (TT_C1521) - 1443408..1443567 (+) 160 Protein_1524 GTP-binding protein -
  TT_RS07675 (TT_C1522) - 1443830..1444507 (-) 678 WP_011173896.1 hypothetical protein -
  TT_RS07680 (TT_C1523) rarA 1444538..1445803 (+) 1266 WP_011173897.1 replication-associated recombination protein A Machinery gene
  TT_RS07685 (TT_C1524) - 1445754..1446323 (-) 570 WP_011173898.1 hypothetical protein -
  TT_RS07690 (TT_C1525) - 1446350..1447135 (-) 786 WP_011173899.1 carbohydrate ABC transporter permease -
  TT_RS07695 (TT_C1526) - 1447165..1448343 (+) 1179 Protein_1529 CaiB/BaiF CoA transferase family protein -
  TT_RS07700 (TT_C1527) - 1448467..1449345 (+) 879 WP_011173901.1 ABC transporter ATP-binding protein -
  TT_RS07705 (TT_C1528) - 1449338..1450108 (+) 771 WP_011173902.1 ABC transporter permease -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46178.98 Da        Isoelectric Point: 8.9760

>NTDB_id=23678 TT_RS07680 WP_011173897.1 1444538..1445803(+) (rarA) [Thermus thermophilus HB27]
MREVEPLAERLRPRSLDEVLGQPHLTGPKGLLRRMLEAGRLSSMVLFGPPGTGKTTLARLLAEGVGRPFLRLSAVEAGLK
EVRQAVEEARAKGGLVLFLDEVHRFNKAQQDALLPHLESGLLTLIGATAENPAFALVPALRSRLRFFPLRPLEEADLLAL
LRRALEDPRGLPGTPYEEEALRVLAQAAGGDARFALNTLELAASFGRVDLKSVREALGAERFGMDREGDRFYDLVSALHK
SLRGSHVDAALYYLARLLQGGADPRYLARRLIRVAVEDVGLADPLALRLAVAAKEAYEALGSPEGELALVEAAVYLALAP
KSNSLYAAWKKAQEAAKAHPEAEVPLNLRNAPTGLARALGHGEGYAYYHEDKEGSFAQRYLPEGLEGLTLFEATGEGWEE
RVRERLKALRERFQTARRRRG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=23678 TT_RS07680 WP_011173897.1 1444538..1445803(+) (rarA) [Thermus thermophilus HB27]
ATGAGGGAAGTGGAACCCCTGGCCGAGCGCCTCAGGCCCCGAAGCTTAGACGAGGTCCTGGGCCAGCCCCACCTCACCGG
CCCTAAAGGGCTTCTAAGGCGGATGCTGGAGGCGGGGCGGCTCTCCTCCATGGTCCTCTTCGGCCCCCCGGGCACGGGCA
AGACCACCCTGGCCCGGCTCCTCGCCGAAGGGGTGGGGAGGCCCTTCCTAAGGCTCTCCGCGGTGGAGGCAGGGCTTAAG
GAGGTGCGCCAGGCGGTGGAGGAGGCGAGGGCAAAGGGGGGCCTCGTCCTCTTCCTGGACGAGGTCCACCGCTTCAACAA
GGCCCAGCAGGACGCCCTCCTCCCCCACCTGGAGTCGGGCCTCCTCACCCTCATCGGGGCCACGGCGGAAAACCCCGCCT
TCGCCCTCGTCCCCGCCCTCCGCTCCCGCCTCCGCTTCTTCCCCTTGAGGCCCCTGGAGGAGGCCGACCTCCTCGCCCTC
CTCAGGCGGGCCCTGGAGGACCCAAGGGGCCTTCCCGGCACGCCCTACGAGGAGGAGGCCCTAAGGGTTCTCGCCCAGGC
GGCCGGGGGCGACGCCCGCTTCGCCCTGAACACCCTGGAGCTCGCCGCAAGCTTCGGCCGGGTGGACCTCAAGAGCGTGC
GGGAGGCCCTGGGGGCGGAGCGCTTCGGCATGGACCGGGAAGGGGACCGGTTTTACGACCTGGTCTCCGCCCTCCACAAG
TCCCTGCGGGGAAGCCACGTGGACGCCGCCCTCTACTACCTGGCGAGGCTCCTTCAGGGCGGGGCCGACCCCCGCTACCT
CGCCCGCAGGCTCATCCGGGTGGCGGTGGAGGACGTGGGCCTCGCCGACCCCCTGGCCCTCCGCCTCGCCGTGGCCGCCA
AGGAGGCCTACGAGGCCCTGGGAAGCCCGGAAGGGGAGCTCGCCCTGGTGGAGGCCGCGGTCTACCTGGCCCTGGCCCCC
AAGAGCAACAGCCTCTACGCCGCCTGGAAAAAGGCCCAGGAGGCGGCCAAGGCCCACCCCGAGGCCGAGGTCCCCCTGAA
CCTGAGAAACGCCCCCACCGGCCTCGCCCGCGCCCTGGGGCACGGGGAGGGGTACGCCTACTACCACGAGGACAAGGAGG
GAAGCTTCGCCCAGAGGTACCTCCCCGAGGGCCTGGAAGGCCTCACCCTCTTTGAGGCCACGGGGGAGGGGTGGGAGGAG
CGGGTGCGGGAAAGGCTTAAGGCGCTTCGGGAGCGGTTCCAAACCGCCAGGCGGCGGAGAGGCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(244-409)

AAA C-terminal domain (AAA_assoc_2)

(176-243)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72HG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

38.717

100

0.387

Multiple sequence alignment