Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MS_RS09215 Genome accession   NC_006300
Coordinates   1989165..1989866 (+) Length   233 a.a.
NCBI ID   WP_011201176.1    Uniprot ID   -
Organism   [Mannheimia] succiniciproducens MBEL55E     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1984165..1994866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS_RS09195 (MS2014) - 1984487..1985605 (-) 1119 WP_011201172.1 TniQ family protein -
  MS_RS09200 (MS2015) - 1985563..1986450 (-) 888 WP_011201173.1 TniB family NTP-binding protein -
  MS_RS09205 (MS2016) - 1986450..1988378 (-) 1929 WP_041640052.1 Mu transposase C-terminal domain-containing protein -
  MS_RS09210 (MS2017) - 1988368..1989030 (-) 663 WP_011201175.1 heteromeric transposase endonuclease subunit TnsA -
  MS_RS09215 (MS2018) comM 1989165..1989866 (+) 702 WP_011201176.1 ATP-binding protein Machinery gene
  MS_RS09225 (MS2019) yccS 1990265..1992451 (+) 2187 WP_041640053.1 YccS family putative transporter -
  MS_RS09230 (MS2022) rplQ 1992792..1993175 (-) 384 WP_011201180.1 50S ribosomal protein L17 -
  MS_RS09235 (MS2023) - 1993211..1994200 (-) 990 WP_011201181.1 DNA-directed RNA polymerase subunit alpha -
  MS_RS09240 (MS2024) rpsD 1994233..1994853 (-) 621 WP_011201182.1 30S ribosomal protein S4 -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26370.27 Da        Isoelectric Point: 10.0649

>NTDB_id=23678 MS_RS09215 WP_011201176.1 1989165..1989866(+) (comM) [[Mannheimia] succiniciproducens MBEL55E]
MTFISSFYRGTIPKPGEISLAHNGVLFLDELPEFERRVLDALRQPLESGEIIISRATAKIQFPAKFQLIAAMNPSPTGNY
QGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPKGALQSLDNRGETSAQIRQRILQVREIQLTRAGKVNAHLSGKE
IERDCKLSTQDSIFLENALTKLGLSVRAYHRILKVSRTIADLDNELHISQRHIAEALGYRAMDRLLQKLNNND

Nucleotide


Download         Length: 702 bp        

>NTDB_id=23678 MS_RS09215 WP_011201176.1 1989165..1989866(+) (comM) [[Mannheimia] succiniciproducens MBEL55E]
ATGACATTTATTTCTAGTTTTTACAGAGGAACCATTCCCAAACCGGGAGAAATATCGCTGGCACATAACGGTGTGCTATT
CTTAGACGAATTACCCGAATTTGAACGGCGGGTTTTGGATGCCTTGCGTCAACCTTTGGAAAGCGGGGAAATTATTATTT
CCCGTGCTACGGCGAAAATTCAATTTCCGGCTAAATTCCAACTTATTGCGGCGATGAACCCAAGCCCTACTGGTAATTAT
CAGGGAACCCATAACAGAACTTCCCCGCAACAAATTATGCGTTATTTAAACCGGTTATCCGGGCCTTTTCTTGATCGTTT
TGACTTGTCAATTGAAGTACCGCTATTACCTAAAGGCGCTTTGCAGAGTTTGGATAACCGCGGCGAAACCAGTGCGCAGA
TTCGACAGAGAATCTTGCAGGTGCGGGAAATCCAATTAACCAGAGCCGGTAAAGTTAATGCTCATTTAAGCGGCAAAGAA
ATTGAACGAGATTGTAAATTAAGTACTCAGGATTCCATATTTCTGGAAAATGCCTTAACAAAATTAGGGCTTTCCGTGCG
CGCCTATCACAGAATTCTAAAAGTGTCGCGCACTATTGCCGATCTGGACAACGAACTCCATATCAGTCAGCGCCATATTG
CGGAAGCCTTGGGATACCGCGCGATGGACAGGCTTTTACAAAAGCTGAACAACAACGATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(128-220)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(10-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

81.982

95.279

0.781
  comM Glaesserella parasuis strain SC1401

80.995

94.85

0.768
  comM Vibrio cholerae strain A1552

64.732

96.137

0.622
  comM Vibrio campbellii strain DS40M4

63.348

94.85

0.601
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

53.333

96.567

0.515
  comM Legionella pneumophila str. Paris

49.533

91.845

0.455
  comM Legionella pneumophila strain ERS1305867

49.533

91.845

0.455

Multiple sequence alignment