Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CEJ46_RS00855 Genome accession   NZ_CP022101
Coordinates   174307..175008 (-) Length   233 a.a.
NCBI ID   WP_013855424.1    Uniprot ID   A0AAW4AGA2
Organism   Vibrio anguillarum strain JLL237     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 169307..180008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEJ46_RS00825 (CEJ46_00825) gspL 169521..170723 (+) 1203 WP_088720721.1 type II secretion system protein GspL -
  CEJ46_RS00830 (CEJ46_00830) - 170734..171231 (+) 498 WP_013855429.1 type II secretion system protein M -
  CEJ46_RS00835 (CEJ46_00835) - 171228..171986 (+) 759 WP_088720722.1 type II secretion system protein N -
  CEJ46_RS00840 (CEJ46_00840) cysQ 172067..172894 (-) 828 WP_010319313.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CEJ46_RS00845 (CEJ46_00845) nudE 172919..173464 (-) 546 WP_013855426.1 ADP compounds hydrolase NudE -
  CEJ46_RS00850 (CEJ46_00850) nfuA 173620..174207 (-) 588 WP_013855425.1 Fe-S biogenesis protein NfuA -
  CEJ46_RS00855 (CEJ46_00855) comF 174307..175008 (-) 702 WP_013855424.1 amidophosphoribosyltransferase Machinery gene
  CEJ46_RS00860 (CEJ46_00860) bioH 175155..175919 (+) 765 WP_088720723.1 pimeloyl-ACP methyl ester esterase BioH -
  CEJ46_RS00865 (CEJ46_00865) - 176187..176657 (+) 471 WP_088720724.1 ATP-dependent Lon protease -
  CEJ46_RS00870 (CEJ46_00870) - 176807..179137 (-) 2331 WP_088720725.1 Tex family protein -
  CEJ46_RS00875 (CEJ46_00875) greB 179484..179966 (+) 483 WP_010319306.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26646.04 Da        Isoelectric Point: 9.4459

>NTDB_id=236755 CEJ46_RS00855 WP_013855424.1 174307..175008(-) (comF) [Vibrio anguillarum strain JLL237]
MLSHWVQKTITRLVSRQCLLCRLPIETHQTGAWCKTCLTYFSPQPRCQQCGLPTLITVPQCGQCLANPPPWQRLYCVGDY
IFPLSHTIHQLKYEGQFWQSRHLSALLTPRIDTPAPLITSVPLHWQRRLKRGFNQSALLASQLSQQLGASCDNQLIKRNR
ATPQQQGLSKLQRKQNLKHAFTLRHLPTHKHIALVDDVVTTGSTVQQICQLLLEVGVERIDIYCICRTPEPKD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=236755 CEJ46_RS00855 WP_013855424.1 174307..175008(-) (comF) [Vibrio anguillarum strain JLL237]
ATGTTATCGCATTGGGTTCAAAAAACCATCACTCGCTTGGTAAGCCGTCAGTGTCTACTGTGTCGTTTACCGATTGAAAC
TCACCAAACTGGGGCTTGGTGTAAGACCTGCCTAACCTATTTTTCACCGCAACCTCGCTGCCAACAGTGCGGCCTGCCAA
CGCTTATTACCGTGCCTCAATGTGGGCAATGTTTAGCGAATCCTCCGCCTTGGCAACGCCTATACTGTGTCGGCGACTAT
ATTTTTCCGCTCAGTCACACCATTCATCAACTCAAATATGAAGGTCAATTTTGGCAATCTCGCCATTTGAGTGCCTTACT
GACGCCACGTATCGACACTCCCGCCCCGCTCATCACTAGCGTTCCGTTGCACTGGCAACGGCGCTTAAAACGCGGCTTCA
ATCAAAGTGCACTACTTGCCTCTCAATTAAGTCAACAACTGGGGGCTAGCTGCGATAACCAGTTGATCAAACGCAATCGC
GCAACGCCCCAGCAGCAAGGGCTTTCTAAATTACAGCGCAAACAAAATCTCAAACATGCATTCACACTACGACACCTTCC
CACGCACAAGCACATTGCACTTGTTGACGATGTCGTGACCACGGGCAGCACCGTGCAGCAAATCTGTCAATTACTGCTTG
AAGTCGGTGTCGAAAGGATTGATATTTACTGCATATGCCGCACTCCTGAACCTAAAGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(136-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

58.369

100

0.584
  comF Vibrio campbellii strain DS40M4

51.681

100

0.528

Multiple sequence alignment