Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CEG15_RS00860 Genome accession   NZ_CP022099
Coordinates   172547..173248 (-) Length   233 a.a.
NCBI ID   WP_013855424.1    Uniprot ID   A0AAW4AGA2
Organism   Vibrio anguillarum strain S3 4/9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 167547..178248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEG15_RS00830 (CEG15_00830) gspL 167751..168962 (+) 1212 WP_088728563.1 type II secretion system protein GspL -
  CEG15_RS00835 (CEG15_00835) - 168973..169470 (+) 498 WP_013855429.1 type II secretion system protein M -
  CEG15_RS00840 (CEG15_00840) - 169467..170225 (+) 759 WP_088728564.1 type II secretion system protein N -
  CEG15_RS00845 (CEG15_00845) cysQ 170307..171134 (-) 828 WP_010319313.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  CEG15_RS00850 (CEG15_00850) nudE 171159..171704 (-) 546 WP_010319312.1 ADP compounds hydrolase NudE -
  CEG15_RS00855 (CEG15_00855) nfuA 171860..172447 (-) 588 WP_013855425.1 Fe-S biogenesis protein NfuA -
  CEG15_RS00860 (CEG15_00860) comF 172547..173248 (-) 702 WP_013855424.1 amidophosphoribosyltransferase Machinery gene
  CEG15_RS00865 (CEG15_00865) bioH 173395..174159 (+) 765 WP_064624180.1 pimeloyl-ACP methyl ester esterase BioH -
  CEG15_RS00870 (CEG15_00870) - 174427..174897 (+) 471 WP_026027513.1 hypothetical protein -
  CEG15_RS00875 (CEG15_00875) - 175047..177377 (-) 2331 WP_088728565.1 Tex family protein -
  CEG15_RS00880 (CEG15_00880) greB 177721..178203 (+) 483 WP_010319306.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26646.04 Da        Isoelectric Point: 9.4459

>NTDB_id=236707 CEG15_RS00860 WP_013855424.1 172547..173248(-) (comF) [Vibrio anguillarum strain S3 4/9]
MLSHWVQKTITRLVSRQCLLCRLPIETHQTGAWCKTCLTYFSPQPRCQQCGLPTLITVPQCGQCLANPPPWQRLYCVGDY
IFPLSHTIHQLKYEGQFWQSRHLSALLTPRIDTPAPLITSVPLHWQRRLKRGFNQSALLASQLSQQLGASCDNQLIKRNR
ATPQQQGLSKLQRKQNLKHAFTLRHLPTHKHIALVDDVVTTGSTVQQICQLLLEVGVERIDIYCICRTPEPKD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=236707 CEG15_RS00860 WP_013855424.1 172547..173248(-) (comF) [Vibrio anguillarum strain S3 4/9]
ATGTTATCGCATTGGGTTCAAAAAACCATCACTCGCTTGGTAAGCCGTCAGTGTCTACTGTGTCGTTTACCGATTGAAAC
TCACCAAACTGGGGCTTGGTGTAAGACCTGCCTAACCTATTTTTCACCGCAACCTCGCTGCCAACAGTGCGGCCTGCCAA
CGCTTATTACCGTGCCTCAATGTGGGCAATGTTTAGCGAATCCTCCGCCTTGGCAACGCCTATACTGTGTCGGCGACTAT
ATTTTTCCGCTCAGTCACACCATTCATCAACTCAAATATGAAGGTCAATTTTGGCAATCTCGCCATTTGAGTGCCTTACT
GACGCCACGTATCGACACTCCCGCCCCGCTCATCACTAGCGTTCCGTTGCACTGGCAACGGCGCTTAAAACGCGGCTTCA
ATCAAAGTGCACTACTTGCCTCTCAATTAAGTCAACAACTGGGGGCTAGCTGCGATAACCAGTTGATCAAACGCAATCGC
GCAACGCCCCAGCAGCAAGGGCTTTCTAAATTACAGCGCAAACAAAATCTCAAACATGCATTCACACTACGGCACCTTCC
CACGCACAAGCACATTGCACTTGTTGACGATGTAGTGACCACGGGCAGCACCGTGCAGCAAATCTGTCAATTACTGCTTG
AAGTCGGTGTCGAAAGGATTGATATTTACTGCATATGCCGCACTCCTGAACCTAAAGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(136-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

58.369

100

0.584
  comF Vibrio campbellii strain DS40M4

51.681

100

0.528

Multiple sequence alignment