Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   MS_RS03370 Genome accession   NC_006300
Coordinates   675582..675869 (+) Length   95 a.a.
NCBI ID   WP_041639601.1    Uniprot ID   -
Organism   [Mannheimia] succiniciproducens MBEL55E     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 670582..680869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS_RS03330 (MS0723) tolB 671319..672611 (+) 1293 WP_041639599.1 Tol-Pal system beta propeller repeat protein TolB -
  MS_RS03335 pal 672623..673083 (+) 461 Protein_646 peptidoglycan-associated lipoprotein Pal -
  MS_RS03355 (MS0724) - 673742..674272 (+) 531 WP_011199903.1 pilus assembly FimT family protein -
  MS_RS03360 (MS0725) - 674269..674910 (+) 642 WP_011199904.1 PulJ/GspJ family protein -
  MS_RS03365 (MS0726) - 674897..675598 (+) 702 WP_011199905.1 DUF2572 family protein -
  MS_RS03370 (MS0727) comQ 675582..675869 (+) 288 WP_041639601.1 DUF5374 domain-containing protein Machinery gene
  MS_RS03375 (MS0728) recC 675944..679387 (+) 3444 WP_041639602.1 exodeoxyribonuclease V subunit gamma -
  MS_RS03385 (MS0729) secG 679612..679953 (-) 342 WP_011199908.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10794.90 Da        Isoelectric Point: 10.1085

>NTDB_id=23665 MS_RS03370 WP_041639601.1 675582..675869(+) (comQ) [[Mannheimia] succiniciproducens MBEL55E]
MRKITKGMTSVSLLITMVLFSVIMLSILQWSGYQRKSAVEIYQYFQAVQIAENQKQRLFLGLGCESQVVQNGIQFRLLCV
GEKITVSYPMGKLTL

Nucleotide


Download         Length: 288 bp        

>NTDB_id=23665 MS_RS03370 WP_041639601.1 675582..675869(+) (comQ) [[Mannheimia] succiniciproducens MBEL55E]
ATGCGGAAAATAACTAAAGGTATGACATCCGTATCTTTATTGATAACAATGGTACTTTTTAGCGTAATAATGCTCAGTAT
TTTGCAGTGGTCCGGTTATCAGCGTAAAAGTGCGGTAGAAATTTATCAATATTTTCAAGCGGTACAAATTGCGGAAAATC
AGAAACAACGGCTGTTTTTAGGTCTGGGTTGTGAATCTCAAGTGGTGCAAAATGGCATTCAATTCCGCCTGTTATGTGTC
GGCGAGAAAATAACCGTAAGTTATCCAATGGGGAAATTAACGTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(56-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

50.538

97.895

0.495

Multiple sequence alignment