Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | CEQ15_RS14225 | Genome accession | NZ_CP022058 |
| Coordinates | 3137495..3138148 (+) | Length | 217 a.a. |
| NCBI ID | WP_027374733.1 | Uniprot ID | - |
| Organism | Chryseobacterium indologenes strain FDAARGOS_337 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3132495..3143148
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEQ15_RS14210 (CEQ15_14215) | aceA | 3132821..3134101 (-) | 1281 | WP_061085148.1 | isocitrate lyase | - |
| CEQ15_RS14215 (CEQ15_14220) | aceB | 3134228..3135802 (-) | 1575 | WP_088584360.1 | malate synthase A | - |
| CEQ15_RS14220 (CEQ15_14225) | - | 3135929..3137407 (+) | 1479 | WP_088584361.1 | helix-turn-helix domain-containing protein | - |
| CEQ15_RS14225 (CEQ15_14230) | comF | 3137495..3138148 (+) | 654 | WP_027374733.1 | ComF family protein | Machinery gene |
| CEQ15_RS14230 (CEQ15_14235) | - | 3138277..3138963 (+) | 687 | WP_088584362.1 | alpha/beta fold hydrolase | - |
| CEQ15_RS14235 (CEQ15_14240) | upp | 3138965..3139615 (-) | 651 | WP_088584363.1 | uracil phosphoribosyltransferase | - |
| CEQ15_RS14240 (CEQ15_14245) | der | 3139771..3141081 (-) | 1311 | WP_088584364.1 | ribosome biogenesis GTPase Der | - |
| CEQ15_RS14250 (CEQ15_14255) | - | 3141685..3143025 (+) | 1341 | WP_088584365.1 | IS5 family transposase | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25454.48 Da Isoelectric Point: 8.0805
>NTDB_id=236281 CEQ15_RS14225 WP_027374733.1 3137495..3138148(+) (comF) [Chryseobacterium indologenes strain FDAARGOS_337]
MILDLLFPNRCIHCNRMIDAELLVCDLCFDQIHFTHYNYFENNPIREKCSLLFPVENTFALIQFEKENLSRKLIHELKYK
GREKVGKILAEWTTEVVDFKNRKPDLLVSVPLHPKKLRERGYNQLHLFTETLSEFYRIPFDHQLIKRNHYSKAQALKDKK
HRLETVNTFSLTQPVSGQHILLIDDVFTTGNTISSIAWEILNSGNNRVSVLVMAIDV
MILDLLFPNRCIHCNRMIDAELLVCDLCFDQIHFTHYNYFENNPIREKCSLLFPVENTFALIQFEKENLSRKLIHELKYK
GREKVGKILAEWTTEVVDFKNRKPDLLVSVPLHPKKLRERGYNQLHLFTETLSEFYRIPFDHQLIKRNHYSKAQALKDKK
HRLETVNTFSLTQPVSGQHILLIDDVFTTGNTISSIAWEILNSGNNRVSVLVMAIDV
Nucleotide
Download Length: 654 bp
>NTDB_id=236281 CEQ15_RS14225 WP_027374733.1 3137495..3138148(+) (comF) [Chryseobacterium indologenes strain FDAARGOS_337]
ATGATACTTGACCTATTATTTCCTAACCGCTGTATTCATTGCAACAGAATGATTGATGCTGAGTTATTGGTATGTGATTT
ATGTTTTGATCAGATTCATTTTACGCATTACAATTATTTCGAAAACAATCCTATTCGCGAAAAATGCAGCCTGCTCTTTC
CTGTTGAGAATACCTTTGCTCTGATACAGTTTGAAAAAGAAAACCTGAGCAGGAAGCTTATCCATGAGCTCAAATATAAA
GGAAGGGAGAAAGTCGGAAAAATTCTTGCAGAATGGACCACGGAAGTAGTGGATTTTAAAAACCGGAAACCCGATCTCCT
GGTAAGCGTTCCTCTTCATCCGAAAAAATTAAGAGAAAGGGGATATAATCAGCTTCACCTTTTCACGGAGACATTGTCGG
AATTTTACAGGATTCCGTTTGATCATCAGCTTATCAAAAGAAATCACTATTCAAAAGCCCAGGCATTAAAAGATAAGAAA
CACAGGCTGGAAACTGTGAATACCTTTTCTTTAACCCAACCTGTTAGCGGGCAACATATTTTACTGATCGATGATGTCTT
TACTACCGGCAATACCATCTCTTCTATAGCCTGGGAGATTTTAAATTCCGGCAACAATAGGGTGAGTGTATTGGTAATGG
CTATAGATGTTTAA
ATGATACTTGACCTATTATTTCCTAACCGCTGTATTCATTGCAACAGAATGATTGATGCTGAGTTATTGGTATGTGATTT
ATGTTTTGATCAGATTCATTTTACGCATTACAATTATTTCGAAAACAATCCTATTCGCGAAAAATGCAGCCTGCTCTTTC
CTGTTGAGAATACCTTTGCTCTGATACAGTTTGAAAAAGAAAACCTGAGCAGGAAGCTTATCCATGAGCTCAAATATAAA
GGAAGGGAGAAAGTCGGAAAAATTCTTGCAGAATGGACCACGGAAGTAGTGGATTTTAAAAACCGGAAACCCGATCTCCT
GGTAAGCGTTCCTCTTCATCCGAAAAAATTAAGAGAAAGGGGATATAATCAGCTTCACCTTTTCACGGAGACATTGTCGG
AATTTTACAGGATTCCGTTTGATCATCAGCTTATCAAAAGAAATCACTATTCAAAAGCCCAGGCATTAAAAGATAAGAAA
CACAGGCTGGAAACTGTGAATACCTTTTCTTTAACCCAACCTGTTAGCGGGCAACATATTTTACTGATCGATGATGTCTT
TACTACCGGCAATACCATCTCTTCTATAGCCTGGGAGATTTTAAATTCCGGCAACAATAGGGTGAGTGTATTGGTAATGG
CTATAGATGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
51.389 |
99.539 |
0.512 |