Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   CEP64_RS19225 Genome accession   NZ_CP022046
Coordinates   1017083..1019473 (+) Length   796 a.a.
NCBI ID   WP_088592315.1    Uniprot ID   A0AAI8GTK5
Organism   Mammaliicoccus sciuri strain FDAARGOS_285     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1012083..1024473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEP64_RS19205 (CEP64_05150) sal(A) 1012390..1014015 (+) 1626 WP_084755564.1 ABC-F type ribosomal protection protein Sal(A) -
  CEP64_RS19210 (CEP64_05155) - 1014075..1015223 (+) 1149 WP_078355870.1 cysteine desulfurase family protein -
  CEP64_RS19215 (CEP64_05160) mnmA 1015216..1016325 (+) 1110 WP_084755566.1 tRNA 2-thiouridine(34) synthase MnmA -
  CEP64_RS19220 (CEP64_05165) - 1016412..1017080 (+) 669 WP_078355869.1 tetratricopeptide repeat protein -
  CEP64_RS19225 (CEP64_05170) recD2 1017083..1019473 (+) 2391 WP_088592315.1 ATP-dependent RecD-like DNA helicase Machinery gene
  CEP64_RS19230 (CEP64_05175) alaS 1019723..1022353 (+) 2631 WP_084755574.1 alanine--tRNA ligase -
  CEP64_RS19235 (CEP64_05180) - 1022421..1022690 (+) 270 WP_037588397.1 IreB family regulatory phosphoprotein -
  CEP64_RS19240 (CEP64_05185) ruvX 1022683..1023111 (+) 429 WP_058592364.1 Holliday junction resolvase RuvX -
  CEP64_RS19245 (CEP64_05190) - 1023131..1023436 (+) 306 WP_025904237.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90467.77 Da        Isoelectric Point: 4.6363

>NTDB_id=236153 CEP64_RS19225 WP_088592315.1 1017083..1019473(+) (recD2) [Mammaliicoccus sciuri strain FDAARGOS_285]
MENLSLFDLSHVKGEVIRILFQNSDNYYTVIKVDVMDSNEDFDQEVTIVGYLPQIVEGETYLFKGKVTNHPKYGKQLQAE
TFEKELPQTKQGVIHYLSSDLFKGIGKKTAETIVDKLGEDALQKIIDDPDVLKEIPKLNKQKRDTIAESIRENQAIERIM
IKLNELGFGPKLAMAIYQFYKEETLNIIKQSPYRLVMDINGIGFQRADQIAEQVGISKDHHDRLVAGVSYFLDQQSLQNG
HTFLPVDILVNGAYELLNHNQPEVVNKDQINAVIIEMSEENKLIIENDNCFLPSLYYSEAKSVQIIHRLYQHQDELKEIE
KSDLQLHIGQIEDMNDVSYADGQKLALETAINHKMMLLTGGPGTGKTTVIRGICELYSEIHGVSLNYDDYQEGTDFPIVL
AAPTGRAAKRLSESTGLEAMTIHRLIGWSKDTQPDDMLDNDIHAHLIILDEMSMVDTWLMYQFLRAVPDYAQIIFVGDED
QLPSVGPGQIFKDLIDSKVIPRVNLTEVYRQQEGSSIIDLAHKIKNGLPVSINEKHHDRSFIPCSSNQIAIVVEKVVQGA
VNKGYNMQDIQVLAPIYRGPAGINKLNELLQDILNPKDKDTRFLQYGDVEYRENDKVLQLINRPDDNVFNGDIGVVTGVY
KAEENALGKDVVIVDYEGNDITYTKQDLSEITHAYCCSIHKSQGSEFPIVIMPIVRQYFRMLQKNILYTGLTRAKQSLVV
CGEEQAFNQGIQTLGHERMTSFDTKLKMYFDTDVETDTESETETIQTKHIILTEDNMFEIDPMINMNDKSPYDFMK

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=236153 CEP64_RS19225 WP_088592315.1 1017083..1019473(+) (recD2) [Mammaliicoccus sciuri strain FDAARGOS_285]
TTGGAAAACTTATCTTTATTTGATCTTTCACATGTTAAAGGTGAAGTTATTAGAATTCTTTTTCAAAACAGTGATAACTA
TTATACCGTTATTAAAGTCGATGTGATGGATTCAAATGAAGATTTTGATCAAGAAGTCACAATTGTTGGTTACTTACCTC
AAATAGTTGAAGGAGAAACGTACCTTTTCAAAGGTAAAGTGACAAACCATCCGAAATACGGTAAACAACTACAAGCCGAA
ACATTTGAAAAAGAATTACCACAAACAAAACAAGGTGTTATCCATTACTTATCGAGTGATTTATTTAAAGGTATTGGTAA
GAAAACAGCAGAAACAATCGTGGACAAACTAGGTGAAGATGCACTTCAGAAAATTATAGATGACCCAGATGTCCTTAAAG
AAATACCTAAACTCAACAAGCAAAAAAGAGATACGATTGCAGAATCAATACGTGAGAATCAAGCCATTGAACGTATTATG
ATTAAACTTAATGAACTTGGTTTCGGTCCAAAACTTGCGATGGCTATTTATCAATTTTATAAAGAAGAAACACTTAATAT
TATTAAACAATCTCCATATCGTTTGGTGATGGATATAAATGGTATAGGGTTTCAAAGAGCTGACCAAATAGCCGAACAAG
TTGGAATTTCAAAAGATCATCATGATCGACTTGTAGCGGGTGTCAGTTACTTTTTAGACCAGCAATCATTACAAAATGGC
CACACATTTTTACCTGTTGATATATTGGTTAACGGTGCATATGAATTGTTAAATCATAATCAACCTGAAGTTGTAAATAA
AGATCAGATTAATGCTGTCATTATAGAAATGAGTGAGGAAAATAAACTTATTATCGAAAATGATAATTGTTTTTTACCTT
CACTTTATTATTCAGAAGCGAAAAGTGTGCAAATCATTCATAGACTTTATCAACATCAAGATGAACTTAAAGAAATTGAG
AAAAGTGATCTTCAATTACACATTGGTCAAATTGAAGATATGAATGATGTTTCATATGCAGATGGACAAAAATTAGCTTT
AGAAACAGCCATTAATCATAAAATGATGCTTTTAACAGGTGGACCTGGAACAGGTAAGACAACAGTTATTCGAGGCATTT
GTGAGTTGTATTCTGAAATACATGGTGTGAGTTTAAATTATGATGATTATCAAGAAGGAACAGACTTTCCAATTGTATTA
GCAGCACCGACTGGTCGAGCAGCAAAACGTTTAAGTGAATCAACAGGACTAGAAGCGATGACGATTCATAGATTAATTGG
TTGGAGTAAAGATACGCAACCGGATGATATGTTAGATAATGATATTCATGCCCATTTAATCATTCTAGATGAAATGTCTA
TGGTAGATACATGGTTAATGTATCAATTTTTAAGAGCAGTCCCTGACTATGCCCAAATCATATTTGTAGGTGATGAAGAT
CAATTACCATCAGTTGGTCCAGGTCAGATTTTTAAAGATTTAATTGATTCTAAAGTGATACCGAGAGTGAACTTAACAGA
AGTTTATAGACAACAAGAAGGATCATCCATCATAGACTTGGCGCATAAAATAAAAAATGGATTGCCTGTTTCTATCAATG
AAAAACATCACGACCGCTCATTTATTCCGTGCAGTAGTAATCAAATTGCGATAGTCGTAGAAAAGGTTGTACAAGGTGCG
GTTAATAAAGGTTATAATATGCAAGATATTCAAGTGCTAGCCCCAATATATCGTGGACCAGCTGGTATTAATAAATTGAA
TGAATTATTGCAAGATATATTAAATCCGAAAGATAAAGATACAAGATTCCTTCAATATGGAGATGTTGAATATCGTGAAA
ATGATAAAGTACTTCAACTTATAAATCGTCCAGATGATAATGTATTTAATGGTGATATTGGTGTAGTAACAGGTGTTTAT
AAAGCAGAGGAAAATGCACTTGGTAAAGATGTTGTCATTGTGGATTATGAAGGGAATGACATAACATACACTAAACAAGA
TTTATCAGAAATTACACATGCTTATTGCTGTTCAATTCATAAATCACAAGGCTCGGAATTCCCAATAGTCATCATGCCTA
TCGTCAGACAATACTTTAGAATGTTACAAAAAAACATTCTATATACTGGACTAACACGTGCGAAACAGTCACTTGTCGTG
TGCGGTGAAGAGCAAGCCTTTAACCAAGGTATTCAAACACTAGGTCATGAGAGAATGACATCGTTTGATACGAAATTAAA
AATGTATTTCGATACTGATGTTGAAACGGATACTGAGTCTGAAACAGAAACTATACAAACGAAACATATTATTTTAACTG
AAGATAATATGTTTGAAATCGATCCGATGATTAATATGAATGATAAATCGCCATATGATTTTATGAAATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-644)

AAA domain (AAA_30)

(339-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(152-243)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.751

100

0.503

Multiple sequence alignment